Streptomyces phytohabitans: ABXR15_06415
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Entry
ABXR15_06415 CDS
T10861
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spih Streptomyces phytohabitans
Pathway
spih03030
DNA replication
spih03410
Base excision repair
spih03420
Nucleotide excision repair
spih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXR15_06415 (ligA)
03410 Base excision repair
ABXR15_06415 (ligA)
03420 Nucleotide excision repair
ABXR15_06415 (ligA)
03430 Mismatch repair
ABXR15_06415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spih03032
]
ABXR15_06415 (ligA)
03400 DNA repair and recombination proteins [BR:
spih03400
]
ABXR15_06415 (ligA)
Enzymes [BR:
spih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABXR15_06415 (ligA)
DNA replication proteins [BR:
spih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABXR15_06415 (ligA)
DNA repair and recombination proteins [BR:
spih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABXR15_06415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABXR15_06415 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABXR15_06415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABXR15_06415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_meth_N
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
XCX48824
LinkDB
All DBs
Position
complement(1561963..1564146)
Genome browser
AA seq
727 aa
AA seq
DB search
MAGEQDTAVPAEARERHARLAEEIEGHRFRYYVKDAPVVSDAEFDRLLRELEGLEGEHPS
LRTPDSPTQKVAGQYATEFTEVAHRERMLSLDNAFDDEELDAWGERVARELEGVEHHLLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIEDVPERLGGDDVPALVEIRG
EVFFPMERFEELNARLVEAGEKPFANPRNAAAGSLRQKDPKVSASRPLRMVVHGIGAREG
FDIGRLSEAYDLLRDWGLPTSPHTRVVDGLAGVRKFIAHHGAHRHAVEHEIDGAVVKLDE
IRLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVDIRVGVGRTGRVTPYAVVEPVTVAGSEV
EFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTEREFAMPAECPDCGT
ELRPMKEGDIDLRCPNARFCPAQLRERIYYLAGRKCLDIEHFGYVAATALTQPLAPSEPP
LRDESQLFDLLLEELLPIRSHVLDQDSGLPKRDPETGEEKVVTFFANKEGEPKKNTLAML
DAIQAAKQRPLARVITGLSIRHVGPVAAEALVREFRSLDRIAAADEAELAAAEGVGPTIA
ASLKAWFAEDWHREIVERWRAAGVRMEEEPQEGEEGPRPLEGVSVVVTGTLAAHTRDGAK
EALQRLGAKVSGAVSKKTGFVVVGENPGSKYDKAVQAKVPILDDEGFEKLLAEGPDAARE
AALQPPE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacaggacacggcggtgcccgccgaggcgcgtgagcggcacgcccggctg
gcggaggagatcgaggggcaccgcttccgttactacgtgaaggacgcgcccgtcgtcagc
gacgccgagttcgaccgcctgctgcgcgagttggagggcctggagggggagcacccctcg
ctgcgcacgccggactcgcccacgcagaaggtcgccgggcagtacgcgacggagttcacc
gaggtcgcccaccgggagcggatgctctcgctggacaacgccttcgacgacgaggagctg
gacgcctggggcgagcgcgtcgcccgcgagctggagggcgtcgagcaccatctgctgtgc
gagctgaaggtggacggcctcgcggtcaacctcacgtacgagcacgggcgcctcacccgc
gccgccacccgcggcgacggccgtacgggcgaggacatcacgccgaacgtccgcaccatc
gaggacgtcccggagcggctcggtggcgacgacgtcccggcgctggtggagatccgcggc
gaggtcttcttcccgatggagcgcttcgaggagctgaacgcgcgactggtcgaggcgggg
gagaaaccgttcgccaacccccgtaacgcggcggcgggttcgctccggcagaaggacccg
aaggtgtcggcgtcccggccgctgcgcatggtcgtgcacggcatcggcgcccgcgagggc
ttcgacatcggccggctctcggaggcgtacgacctgctgcgcgactggggcctgccgacg
tcgccgcacacgcgcgtggtggacgggctggcgggcgtacggaagttcatcgcgcaccac
ggcgcgcacagacacgccgtcgagcacgagatcgacggcgccgtggtgaagctggacgag
atccgcctccaggggcggctcggctccacctcgcgcgcgccgcgctgggccatcgcctgg
aagtacgcgccggaggaggtcaacaccaagctcgtcgacatccgggtcggtgtcggacgc
accggccgggtcacgccgtacgcggtggtggagcccgtcacggtggcgggctccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtccgcgccaagggcgtgctgatcggtgac
accgtcgtgctgcggaaggcgggcgacgtcatcccggagatcctcgggccggtcgcggac
ctgcgggacggcaccgagcgggagttcgcgatgcccgcggagtgccccgactgcggcacg
gagctgcgccccatgaaggagggcgacatcgacctccgctgccccaacgcccgcttctgc
ccggcccagttgcgcgagcggatctactacctggcggggcgcaagtgcctggacatcgag
cacttcgggtacgtggcggcgaccgccctcacccagccgctcgccccgtccgagccgccg
ctgagggacgagagccagctgttcgacctgctgctggaggagctgctgccgatccgctcg
cacgtcctggaccaggacagcggcctgcccaagcgcgacccggagacgggtgaggagaag
gtcgtcaccttcttcgccaacaaggagggcgagccgaagaagaacaccctcgccatgctc
gacgccatccaggccgccaagcagcggccgctggcccgcgtcatcaccgggctgtcgatc
cgtcacgtcgggccggtcgcggcggaggcgctcgtacgggagttccgctccctcgaccgc
atcgcggcggccgacgaggccgaactggccgccgccgagggcgtcgggccgacgatcgcc
gcgtccctgaaggcgtggttcgcggaggactggcaccgggagatcgtggagcgctggcgc
gccgccggggtcaggatggaggaggagccgcaggagggcgaggaggggccgcgtccgctg
gagggcgtcagcgtcgtcgtcaccggcacgctcgccgcgcacacgcgggacggcgcgaag
gaggcgctccagcggttgggcgcgaaagtgagcggagcggtctcgaagaagaccggattc
gtcgttgtgggcgagaaccctggctcgaaatacgacaaggcagtccaggcgaaagtgccg
attctggacgatgagggtttcgagaagctgctcgcggagggcccggacgcggcacgggag
gccgcacttcagccacccgaatag
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