Sphingomonas piscis: G7077_05370
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Entry
G7077_05370 CDS
T07460
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spii
Sphingomonas piscis
Pathway
spii03030
DNA replication
spii03410
Base excision repair
spii03420
Nucleotide excision repair
spii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7077_05370 (ligA)
03410 Base excision repair
G7077_05370 (ligA)
03420 Nucleotide excision repair
G7077_05370 (ligA)
03430 Mismatch repair
G7077_05370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spii03032
]
G7077_05370 (ligA)
03400 DNA repair and recombination proteins [BR:
spii03400
]
G7077_05370 (ligA)
Enzymes [BR:
spii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7077_05370 (ligA)
DNA replication proteins [BR:
spii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7077_05370 (ligA)
DNA repair and recombination proteins [BR:
spii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7077_05370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7077_05370 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7077_05370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7077_05370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QIK78420
UniProt:
A0A6G7YNU9
LinkDB
All DBs
Position
complement(1092880..1094913)
Genome browser
AA seq
677 aa
AA seq
DB search
MPEPTEAEAANRLMRLAREIARHDRLYHDQDAPEISDADYDALVRENRALEEQFPQLVRK
DSPSQRLGATPSTALAKVAHARPMLSLENAFGDEEVQEFVRRVRRFLSLPDDEIVALTAE
PKIDGLSCSLRYEAGHLVLAATRGDGSVGEDVTANVRTISDIPQAIPGAPDVLEVRGEVY
MSKADFAALNQRQEASGGKIFANPRNAAAGSLRQKDPGNTAARPLRFLAHGWGELSAPLS
ESQFEAMRRIAGFGLPVSDMLVRVDTIDALLAHYAAIEHARADLPFDIDGVVYKVDRLDW
QERLGQVARAPRWGLAHKFPAEKAETTLEAIDIQVGRTGKLTPVGRLKPVGVGGVMVSNV
TLHNRDEIARLGLRTGDRVRIQRAGDVIPQVVENLTRGESREAYVFPSECPQCGSEAVAE
EGEVDVRCTGGLICPAQRFERLRHFVSRGALDIEGLGEKTIAEFSELGWLHSPADIFRLS
QHRADLLGREGWKEKSVDNLLAAIEAKRAPDPARFLFGLGIRHIGIVTAKDLLRCFGTVE
ALRDAATGENGQAELASVEGVGPIVAEALVDFFHEEHNRTALDDLLSEVRPQPFQSQAKQ
TEWTGKTIVFTGSLETMSRDEAKAQAERLGARAAGSVSAKTDLVVAGPGAGSKLKKAEEL
GIRVATEAEWAQIVAKA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaccgaccgaggccgaagccgccaaccggctgatgcggctggcgagggagatc
gcccgccacgaccgcctctaccatgatcaggacgcgcctgagatcagcgatgctgactat
gacgcgctggttcgggagaaccgggcgctggaggaacaattcccgcaattggtgcggaag
gacagtccctcgcagcggcttggggcgactccctcgaccgcgctggccaaggtcgcacac
gcacgaccgatgctcagccttgagaatgccttcggtgatgaggaggtgcaggagttcgtc
cggcgagtccggcgattcctgagcctgcccgacgacgagatcgtcgcgctgaccgccgag
ccgaagatcgacggcctatcctgctccctgcgttatgaagccgggcaccttgtgcttgct
gccacgcggggcgacggcagcgtcggcgaagacgtaaccgccaatgtccgcaccatctcc
gacattccgcaggcaatccctggcgcaccggatgtgctcgaagtgcgcggcgaggtgtac
atgtcgaaggcggactttgccgccctgaaccagcggcaggaagcgagcggcggcaagatc
ttcgccaatccgcgcaacgccgccgctgggtcccttcggcagaaggacccaggcaacacg
gcggcgcggccattgcgtttcctcgcgcacggctggggcgagctttcggcgccgctgagc
gagtcgcagttcgaagccatgcgccggatcgcgggcttcggcctgcccgtctctgacatg
ctggtgcgggtagatacgatcgacgccctgcttgcccattatgccgccatcgaacatgcg
cgagccgatctgcccttcgacatcgacggtgtggtctacaaggtcgaccggctcgactgg
caggagcggctcggccaggtggcgcgggctccccgatgggggctggcacacaaatttccg
gcggagaaagcggaaacgacactggaggcaatcgacatccaggtcggccgaaccggcaag
ctgacgccggtcggacgcctgaagccggtcggcgtcggcggcgtgatggtgtccaacgtg
acccttcacaaccgcgacgagatcgcgcggcttggtcttcgaactggcgaccgggtgcgg
atacagcgcgccggcgacgtcatcccacaagtggtcgagaacctgacccgtggcgaatcg
cgcgaggcctatgtcttcccaagcgaatgcccgcagtgcggcagcgaggcagtagcggag
gaaggcgaagtcgacgtccgctgcaccggcgggctcatctgcccggcgcagcggttcgag
cgcttgcgacatttcgtgtcgcgcggcgcgctggatatcgaagggttaggcgagaagacc
attgccgaattcagcgagcttgggtggcttcactcgccggccgacatctttcgcttgtcg
cagcatcgcgccgacctgctcgggcgcgaggggtggaaggaaaagagcgtcgacaatctt
ctcgccgctattgaggcgaagcgagcccctgatcccgcgcgttttctattcggccttggc
atccgccacatcggcatcgtcaccgctaaggatctgctccgctgcttcggcacggtagag
gcgcttcgtgatgccgcaactggcgagaacgggcaggccgagttagcgagcgtcgagggt
gttgggccgatcgtcgccgaagccttggtcgacttctttcacgaggagcataaccgcacc
gcgctcgacgacctcctttccgaagtccgcccgcagccattccagtcgcaggcgaagcag
accgaatggaccggcaagaccatcgtcttcaccggcagcctggagacgatgagccgtgac
gaggcaaaggcgcaggcggaacggttgggtgcgcgtgcggcgggttcggtcagcgcgaag
accgacttggtggtggcgggaccaggcgctggatcaaagctcaagaaggcggaggagctc
ggcattcgcgtggcgacagaagccgaatgggcgcagatcgtcgccaaggcttag
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