Sardina pilchardus (sardine): 134071466
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Entry
134071466 CDS
T10667
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134071466 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spil03400
]
134071466 (lig4)
Enzymes [BR:
spil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134071466 (lig4)
DNA repair and recombination proteins [BR:
spil03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134071466 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
134071466
NCBI-ProteinID:
XP_062384175
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All DBs
Position
23:complement(23041534..23045252)
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AA seq
905 aa
AA seq
DB search
MEGNSSPVDSVADHVPFIHLCSTLEKIQRARTRPDKVKFLKDFMDSWRNFHTALHKAKDT
GDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLGLPQNGPEAKKLLNYRAPTTSQA
ESGDFAGMAYFVLKKRCDSEGDLTIKQVNDFLDSVAMNNAKKQKDQVKKNLLHLITQSSA
LEQKWLIRMILKDMKLGVSKETVLQAFHRDGPELYNVTTDLNKVCKQLHDPTLSLSEVSI
GLFSAFKPMLAAVANIKQVEKQIAGKMLFIETKLDGERIQLHKDGDVYKYYTRNSFEYSQ
QFGTSPLEGSLTPFIHNVFKPHVVQCILDGEMMAYNPTTETMTQKGSKFDIKRLMDDSDL
QTCFCVFDILLLNDQKFANEPLKKRQDILPTVVSPVKGRIQLVSRVEARTTQEVVDALNE
AIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRGGMM
SHFLCAVAETPPAGEKPSVFHTLCRIGSGYTMKELYELGLKLAKHWKVYRKNDPPAAILC
STEKPEVYIEPSKSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCMTLDELS
QYRSKASGKLASRHFHIQEGQPDAKKRKKIVPKLKKKVGIIDHFRSQDLSAISKETDMFE
DVEFCVINGTEEHSKAELERGVARCGGIIVQNPGKDSYCIIAGVENMRVKNLISSDQHDI
VWASWLLECLDQKQVVPWQPRHMIHMSPSTREHFAQEYDTNGDSYFVDTDTQQLREVFSR
ISTSNLQELSVGDVEQKYGWEDLPTSMFRPFTAYIDRCTDIKDPKSVILGSCLDTCALEF
RFHGGTVEQKLLEGVSHVIVAEEKRILELRVLRRLFKKKFKIVEQTWVTDSIKAGHLQND
NDYLK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaaactcaagtccagtggattccgtggctgaccacgtcccattcattcacctg
tgttccactcttgaaaagatccagagagcaagaacacgaccagacaaagtcaagtttttg
aaggacttcatggattcatggagaaatttccacactgccctccataaagcaaaagatact
ggtgactcgttctaccctgctatgcggctcattgtcccttcttttgaaagggagaggatg
gcctacggaattaaggagaatatgttggccaagctctacatcgacgttttgggtcttcca
cagaacgggccagaggcaaaaaaacttctcaactaccgtgctccgacaacgtctcaggca
gagagcggggattttgcaggcatggcttactttgtcttgaaaaaacgttgtgatagcgag
ggggatctgaccataaagcaagtgaatgactttctggattctgtcgcaatgaacaatgcc
aaaaagcagaaagaccaggtgaagaagaacctcctccatctgatcacccagagttctgcc
ttggagcagaagtggctcatccgtatgatcttgaaagacatgaagctcggggtcagcaag
gaaacggtgcttcaggccttccatagagatggtccagagctctacaatgtaaccactgac
ttgaacaaggtgtgcaagcagctccacgatccaacgttgtccctgagtgaagtctctatt
ggactcttctctgccttcaagccaatgctggcagctgttgccaacatcaagcaggtggag
aaacagattgcaggcaagatgctcttcattgagacaaaacttgatggagaacgcatccag
ctgcacaaagacggagacgtttataaatattacacacgaaactcctttgagtactctcag
cagttcggtacttcaccacttgagggctccctcacacctttcattcacaatgtttttaaa
cctcatgtagtgcagtgcatcctggatggtgagatgatggcctacaacccaacaactgag
acaatgacgcaaaaaggtagcaaatttgacataaagaggttaatggatgactccgactta
caaacttgcttctgtgtttttgacatcctactcctcaatgaccagaaatttgcaaatgag
cccctgaaaaagcgccaagacattcttccgactgttgtttcgccggtgaaaggtcggatc
cagctcgtctccagagttgaggccagaaccacgcaggaggtagttgatgcactcaacgaa
gccattgacaatcgtgaagaaggcatcatggtcaaagaccctttgtcgatctacaaacca
gacaagcgcggggagggatggctgaaaatcaaaccggagtatgtagacggcctgatggat
gagctggacttgttgatagtcggtggctactgggggaaaggcaggcgaggaggaatgatg
tcacatttcctgtgtgctgtagcagaaacaccccctgccggtgagaagccatcagtcttc
catactctgtgccggattggctctggctacaccatgaaggaactgtatgaacttggtctg
aagttggcaaaacattggaaggtgtaccgaaaaaatgatccaccagcagccatcttgtgt
tccactgagaagcctgaggtgtacattgaaccaagcaagtctgttatcattcaagtcaaa
gcagcagagattgtgagcagtgatatgtacaagactaactgtacacttcgctttcctcgt
attgagaagatccgggaagataaggagtggcaccaatgcatgactttggatgagttgagt
caatatcgaagtaaagcttcaggaaaactggcctccaggcacttccatattcaggaaggt
caacctgatgcgaaaaaacgaaagaagatcgttcccaagctcaagaagaaagtaggcatc
attgaccattttagatctcaggacctgtccgccatttcgaaagaaaccgacatgtttgaa
gatgtagagttctgtgtgatcaacgggactgaggaacactccaaggccgagctggagagg
ggtgtggcgcgctgtggtggaatcatcgtgcaaaatccagggaaggactcgtactgcata
atagcaggggtggagaacatgcgggtgaagaacctcatctcttctgaccagcatgatatt
gtctgggccagttggcttctagaatgtctggaccagaaacaggtggtgccatggcaacca
aggcacatgatccacatgtcgccatccacgcgagagcactttgcccaggagtacgacact
aatggtgacagctactttgtggacacagatacacagcagctaagggaggtgtttagcagg
atctccacgtcaaatctacaagaacttagcgtaggtgatgtggagcagaagtatggatgg
gaagatttgccaaccagtatgttcaggcctttcacagcctacattgatcgctgcactgac
attaaagaccctaaaagtgttatccttgggtcttgcttggatacatgtgcacttgagttt
cgattccatgggggcactgtggagcagaagcttctagaaggggtgtctcatgtcattgtt
gccgaagagaaaagaatactggaattaagagtgctccgaagactgtttaaaaagaaattc
aagattgttgaacagacatgggtgacagactccatcaaagcgggacaccttcagaatgac
aatgactacctgaaatga
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