Sardina pilchardus (sardine): 134076688
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Entry
134076688 CDS
T10667
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134076688 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spil03041
]
134076688 (eftud2)
Spliceosome [BR:
spil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134076688 (eftud2)
Complex C
U5 SnRNP specific factors
134076688 (eftud2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
134076688
NCBI-ProteinID:
XP_062387842
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All DBs
Position
3:12089689..12102292
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AA seq
970 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDEDDDLEAEDRDIDEVDEDDEDEPGEGDEDVPSMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLMEQELPATVYDMEFLADL
MDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGIK
STPVTMVLPDSRDKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKIDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDESLVVSP
LLGNVCFATPQYSTCFTLASFAKIYSDTYGDVNYTEFAKRLWGDIYFNPKTRKFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNR
FFGEFTGFVDMCVQHIPSPQTGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKMY
STDDGVQFHAFGRVLSGTLQAGQPIKVLGENYSLEDEEDSQVCTVGRLWISVARYQIEVN
RVPAGNWILIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFH
HWQIVPGDPLDKGIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVMLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctctatgatgagtttggtaattacatcggtccagagctggactcagac
gaggatgatgacctggaggctgaggatcgggacattgacgaggttgatgaagatgatgaa
gatgagccaggagagggggatgaagatgtccctagcatggaggtggtcctgcatgaggac
aagaaatattaccccacagctgaggaggtgtatggaccggaagtggagactatcgtccaa
gaggaggacacgcaacctttaacagagcccattattaagcctgttaaaaccaaacagttc
acactcatggagcaggagttgccagcaactgtctatgacatggagttcttggctgatctg
atggacaatccagaactgatcaggaacgtcacgctgtgtggtcatctgcatcatggaaag
acatgctttgtggactgcttgattgaacagactcacccggaaatccggaagagagatgat
gcagatcttcgttacacagacatcctcttcactgagcaggagagaggagttggaatcaag
agcacccctgtcacaatggtacttcctgactccagggataaatcgtacctgttcaacatc
atggacacaccaggtcacgtgaacttctccgacgaagtgaccgcggggatccgcctctca
gacgggatcgtgctcttcatcgatgctgcagagggcgtgatgttgaacacagagcgtctg
atcaagcacgccgtgcaggagcgcctggccatcaccatctgcatcaacaagatcgaccgt
ctgatcgtggagctcaagctgccccccaccgacgcctactacaagctgcgccacatcgtg
gacgaggtcaacggcatgctcagcacgtactccacagacgagagcctggtggtgtctcct
ctcctggggaacgtgtgcttcgccacccctcagtacagcacctgctttacactcgcctcc
ttcgccaagatctactcagacacatatggtgatgtcaattacacagagtttgccaagagg
ctgtggggtgacatttacttcaacccaaaaacacggaagttcaccaagaaggctcccacc
agtaactcacagcgcagctttgtggagtttgtgctggagccgctctataagatcctgtct
caggtggtgggggacgtggacacgtctctgccgcgagtgctggacgagctgggcatccac
ctgaccaaagaagagctcaagctcaacatccgaccactgctccgcctcgtttgcaaccga
ttctttggggagttcacaggttttgtggacatgtgtgtgcagcacatcccgtctcctcag
acaggagctcgagccaagatcgagcacagctacacaggcggcctggactctgacctgggg
gaggcaatgaccgagtgtgacccagatggccctctcatgtgccacaccaccaagatgtac
agcactgatgacggggtccagttccacgcctttggtcgcgttctaagtggaaccctgcaa
gcgggtcagcccatcaaggttctgggggagaactactcgttggaggatgaggaggactcg
caggtctgcaccgtcggccgcctctggatctcagttgccaggtaccagatcgaagtgaat
cgtgtcccagcaggaaactggatcctaattgaaggttgtgatcagccaatcgtgaaaaca
gccaccatcacagaacctcgaggaaatgaagaggctcagatcttcaggccgctgaagttt
aacactgcctcagtgatcaagatcgccgtggagcccgtcaatccgtctgagctgcccaag
atgttggacggtctcaggaaagtcaacaagagctacccctcgctgaccactaaggttgag
gagtctggggagcatgtcatcttgggaacaggtgagctctacctggactgtgtgatgcac
gacctgcgcaagatgtactccgaaattgacatcaaggtggctgaccctgtggtgaccttc
tgtgagacggttgtcgagacctcgtcactgaagtgtttcgccgaaacgccaaacaaaaag
aataagatcaccatgattgcggagccgctggagaagggcctggcggaggacattgagaac
gaagtggtgcagatcacctggaacagaaagaagttgggagagtttttccagaccaagtac
gactgggatttgctagctgctcgttccatctgggcctttgggcccgacaccactggcccc
aacattctagtagacgacactctgccctctgaggtggataaagctttgctgggctccgtg
aaggacagcatcgttcagggattccagtggggaacgagagagggaccactgtgtgatgaa
cccatccgtaatgtgaagtttaagatcctggacgcagtgatcgcccaggagccgctgcac
agaggtggaggacaggtcatccccaccgcccggcgagtggtctactccgccttcctcatg
gccacacctcggttgatggagccatactactttgtggaggttcaagccccagctgattgt
gtgtcggcagtgtacactgtactcgcaaggagaagagggcacgtgactcaggacgctccc
atccccggctctcccctgtacaccatcaaggccttcatccctgccatcgactccttcggc
tttgagacggacttgcggacgcacactcagggacaggcatttgcgctgagcgtgttccac
cactggcagattgtcccgggtgatcccctggataaggggattgtgattcgtcccctggag
ccccagcctgcccctcacctggcccgggagttcatgatcaaaacacgccgacgcaagggc
ttgagcgaggatgtgagtatcagcaagttcttcgacgatcctatgttgttggagctggcc
aaacaggacgtgatgctcaactaccccatgtga
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