Sardina pilchardus (sardine): 134093740
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Entry
134093740 CDS
T10667
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04010
MAPK signaling pathway
spil04120
Ubiquitin mediated proteolysis
spil04140
Autophagy - animal
spil04144
Endocytosis
spil04620
Toll-like receptor signaling pathway
spil04621
NOD-like receptor signaling pathway
spil04622
RIG-I-like receptor signaling pathway
spil05132
Salmonella infection
spil05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134093740 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134093740 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134093740 (traf6)
04140 Autophagy - animal
134093740 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
134093740 (traf6)
04621 NOD-like receptor signaling pathway
134093740 (traf6)
04622 RIG-I-like receptor signaling pathway
134093740 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134093740 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
134093740 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spil04131
]
134093740 (traf6)
04121 Ubiquitin system [BR:
spil04121
]
134093740 (traf6)
Enzymes [BR:
spil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134093740 (traf6)
Membrane trafficking [BR:
spil04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
134093740 (traf6)
Ubiquitin system [BR:
spil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
134093740 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
DUF6746
RING_XB3-XBAT31
TRAF3_RING
U-box
zf-TRAF_2
zf-RING_11
TRAF6_Z2
Filament
DUF7310
BLOC1_2
SlyX
Motif
Other DBs
NCBI-GeneID:
134093740
NCBI-ProteinID:
XP_062402934
LinkDB
All DBs
Position
10:complement(6337319..6340786)
Genome browser
AA seq
541 aa
AA seq
DB search
MDITLILSTLFIISRHQVEMMGEQCCSKPTVKSCGDDGGFEMGLPVHEKLTKSIRSTDTL
NVGLQEDSGMHTPPPQGYDAEFDPPLEKKYECPICLMALRTAVQTPCGHRFCRGCIERSI
RDAGSKCPIDNEVLTLDQLFSDNFANREILSLTVACCNSECHQKMELRYLESHLAQCQFS
TEPCPLCQAALHKNQLDEHTVQHCLRRPVPCPACMEMYIWDEKQLHEDLCPFASVVCKYC
SGELIRDHLASHCDTDCPEAPVTCTFSSFGCEEKMSRSSLAQHMQEFTHLHLNSMAAFLK
RQSLYGEPSSMGAAASSSAVTSEMDTGSVDHLGLRQMRETVQQLDGRLVRQDHQLRELSI
QAHTQAAQLQHLHQQTATLEHAVQELEAQQCNGVFTWRVEGFQEHLESHRANQPVVLYSP
GFYTGRPGYRLCLRLQLQPPIATHNPNFLSLFVHTMRGAFDHQVAWPLQGTLKLTILDPA
EGLHMTEVMETKPDLLAFQRPTADRNLKGFGYVTFVHMSKLSKRYMKDNVLQVCCEATPK
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggatattactcttatattgtctactttattcattatttccagacatcaagtcgaaatg
atgggggaacagtgttgtagtaagcctactgttaaaagctgcggagacgatggaggattt
gagatgggcctacctgtgcatgaaaaacttacaaaatccattagatctactgacactttg
aatgtaggcctacaggaagactctggtatgcatacgcctccgccacaaggctatgatgca
gagtttgaccctccacttgagaaaaaatatgaatgtccaatttgtcttatggcgctccgg
acggcagtgcaaactccatgtgggcatcggttctgccgtggttgcatcgagagatcaatt
agggacgcaggatcaaaatgtccaatagacaatgaggtattaacactggaccagctcttc
agcgataacttcgccaatcgagagatcctgtctctcactgtggcttgctgcaattccgaa
tgccaccagaagatggagctccgatatttagaatctcatttggcccagtgccagttctct
actgagccgtgcccgttgtgccaggctgcactgcataagaaccagctggacgagcacaca
gtccaacactgcctacgtcgcccagttccctgccctgcttgtatggaaatgtacatctgg
gatgaaaaacagcttcatgaagacctgtgccctttcgccagtgtggtgtgcaagtactgc
agtggagagctcattcgtgaccatttggcgtcacattgtgatacagactgtcctgaagct
ccagtcacttgcactttcagttccttcggatgtgaggaaaagatgtcacgcagttccctc
gcccagcacatgcaagaattcacccacttgcacttaaattccatggctgcctttctcaag
cgccagagcctatatggagagccgtcgtccatgggtgcggctgcgagcagttctgcagtc
acatctgaaatggatactggctcggtggaccacttgggcctgcgacaaatgcgtgagacg
gtgcaacagctggacggtcgcctggtgaggcaggaccaccagctccgcgagctgagcatc
caggcccacacccaggcagcgcagctgcagcacctgcaccagcagaccgccactctggag
cacgccgtgcaggagctggaggcccagcagtgcaacggtgttttcacatggcgcgtggaa
ggctttcaggaacacctcgaaagccacagagccaatcagcccgtggtcttgtacagtcca
ggcttctacaccggccggcccggctacaggctctgcctgaggctgcagctacagccaccc
attgccacccacaaccccaacttcctgtctttgtttgtgcacaccatgcgtggggctttt
gaccaccaggtggcctggcccctccagggcacattaaagctgaccatactggatccagct
gaaggtctgcacatgacagaagtcatggagaccaagccagacctacttgcatttcagcgc
cctactgctgatcgcaacctgaagggctttggttatgtcacttttgtgcacatgagcaag
ctgtctaagaggtatatgaaagacaatgtcctccaggtgtgttgtgaggccacaccaaaa
ctttaa
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integrated database retrieval system
