Skermania pinensis: KV203_12530
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Entry
KV203_12530 CDS
T07358
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spin
Skermania pinensis
Pathway
spin03030
DNA replication
spin03410
Base excision repair
spin03420
Nucleotide excision repair
spin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KV203_12530 (ligA)
03410 Base excision repair
KV203_12530 (ligA)
03420 Nucleotide excision repair
KV203_12530 (ligA)
03430 Mismatch repair
KV203_12530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spin03032
]
KV203_12530 (ligA)
03400 DNA repair and recombination proteins [BR:
spin03400
]
KV203_12530 (ligA)
Enzymes [BR:
spin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KV203_12530 (ligA)
DNA replication proteins [BR:
spin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KV203_12530 (ligA)
DNA repair and recombination proteins [BR:
spin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KV203_12530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KV203_12530 (ligA)
MMR (mismatch excision repair)
DNA ligase
KV203_12530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KV203_12530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
BRCT_2
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
QXQ12759
LinkDB
All DBs
Position
complement(2703746..2705893)
Genome browser
AA seq
715 aa
AA seq
DB search
MTDPDLPRGSGATAAEPSDRERWQQLADEVREHQFRYYVRDAPIIADGEFDALLGELTAL
EEAHPDLRTPDSPTQLVGGGFATEFTAVDHLERMLSLDNVFDEDELRAWIARVEAELGTD
LHYLCEVKIDGVALNLVYEHGVLVRGATRGDGRTGEDVTLNARTIDDIPARLTPTDAFPI
PELLEVRGEVYFRLADFEALNAAIVADGKPPYANPRNTAAGSLRQKDPAVTARRNLHMYC
HGFGRIVGFAATSQFEAYAALAAWGLPVSPHTRLVQGADAVIERVRYWGEHRHDIEHELD
GQVIKIDEVAVQRRLGSTARAPRWAIAYKYPPEEVTTRLLDIKVNVGRTGRVTPFAFMEP
VVVAGSTVARATLHNASEVQRKGVLIGDLVTIRKAGDVIPEVLAPVVDARTGDERAFVMP
THCPECGTALAFEKEGDADIRCPNGRTCPAQLRERIFHIASRSAFDIEALGYEAAVDLLG
SGVLTDEGELFGLTADDLLRTNLYRTKAGALSANGRKLLDNLAAAKDRPLWRVLVALSIR
HVGPTAARALATEFASLDRIVAASEEELAAAESVGPTIAVAVREWFAVDWHRAIVDRWRA
AGVRLADERDASIARTLEGMSIVVTGSLQAYSRDEAKEAILVRGGKAAGSVSKKTAFVVV
GDSPGTKAEKAEQLGVPILDEDGFTRLLVDGPDAVRPPAVDEPAAEPADPQIADS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcccgacctgccccgcggctccggtgccacagcggccgagccgtcggatcgg
gaacgctggcagcaactcgccgacgaggtgcgcgaacaccagttccgctactacgtccgc
gacgcaccgatcatcgccgacggcgagttcgacgcgctgctgggcgagctgacggcgctg
gaggaggcgcatccggacctgcgcacgccggattcgccgacccagctggtcggcggtggg
ttcgccaccgagttcaccgcggtcgaccatctggagcgaatgctcagtctggacaacgtg
ttcgacgaggatgagctgcgggcgtggatcgcccgggtcgaggcggagctcgggaccgac
ctgcactatctgtgcgaggtcaaaatcgacggggtcgcgctgaacctggtctacgagcac
ggtgtcctggtccgtggggccacccgcggcgacggtcggaccggcgaggacgtcacgctg
aacgcccggaccatcgacgacatcccggcccggctcacgccgaccgacgcgttcccgatc
ccggagctgctcgaggtgcgcggcgaggtctacttccggctcgccgacttcgaggcgctc
aacgccgcgatcgtcgccgacggcaagccgccctatgccaacccgcgcaacaccgcggcc
ggctcgttgcggcagaaggacccggcggtgaccgcccggcgcaacctgcacatgtactgc
cacggtttcggccggatcgtcgggttcgccgcgacgtcccagttcgaggcgtacgcggcg
ctggccgcctggggtctgccggtgtccccgcacacccggctggtgcagggggcggacgcg
gtgatcgagcgggtccggtactggggcgagcaccggcacgacatcgagcacgaactggac
ggtcaggtgatcaagatcgacgaggtggcggtgcagcgccggctcgggtctaccgcacgt
gcgccgcgctgggcgatcgcctacaagtacccgccggaggaggtcaccacccggctgctg
gacatcaaggtcaatgtcggccggaccgggcgggtgaccccgttcgcgttcatggagccg
gtcgtggtagccggctccacggtcgcgcgggcgaccctgcacaacgcgtccgaggtccag
cgcaaaggcgtgctgatcggcgacctggtcaccatccgcaaggcgggcgacgtgatcccg
gaggtgctggcgccggtggtcgatgcgcgcaccggcgacgagcgcgcgttcgtcatgccg
acccactgccccgagtgcggtaccgcgttggcgttcgagaaggagggggacgccgacatc
cgctgtccgaacgggcggacctgtccggcgcaactgcgcgagcggatctttcacatcgcg
agccggtccgcgttcgacatcgaggcgctcgggtacgaggccgcggtcgacctgctcggc
tccggggtgctcaccgacgagggtgagctgttcggcctgaccgcggacgacctgctgcgg
acgaacctgtaccggacgaaggccggtgccctctcggcgaacggccgcaaactgctcgac
aatcttgcggcggccaaggatcggccgttgtggcgggtgctggtcgcgctgtcgatccgg
cacgtcggcccgaccgcggcgcgggcgctcgccacggagttcgcgagcctggaccggatc
gtcgcggcgtcggaggaggagctggccgccgccgagagcgtcgggccgacgatcgcggtc
gcggtgcgggaatggttcgccgtcgactggcaccgggcgatcgtggatcggtggcgtgcg
gccggggtgcggctggccgacgagcgggacgcctcgatcgcccgcacgctggaaggcatg
tcgatcgtggtgaccgggtcgctgcaggcctactcccgggacgaggcgaaggaggcgatc
ctggtccgcggcggcaaggcggccggttcggtgtcgaagaagacggcgttcgtcgtggtc
ggggattcgcccgggaccaaggcagagaaggcggagcagctgggcgtgccgatcctcgat
gaagacgggttcacccggctgctggtcgacggcccggacgcggtccgaccgccggcggtg
gacgagccggcggcggaacccgccgatccgcagatcgcggactcgtga
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