Spirillospora sp. NBC_01491: OHA34_32485
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Entry
OHA34_32485 CDS
T09711
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spiq
Spirillospora sp. NBC_01491
Pathway
spiq03030
DNA replication
spiq03410
Base excision repair
spiq03420
Nucleotide excision repair
spiq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spiq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OHA34_32485 (ligA)
03410 Base excision repair
OHA34_32485 (ligA)
03420 Nucleotide excision repair
OHA34_32485 (ligA)
03430 Mismatch repair
OHA34_32485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spiq03032
]
OHA34_32485 (ligA)
03400 DNA repair and recombination proteins [BR:
spiq03400
]
OHA34_32485 (ligA)
Enzymes [BR:
spiq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OHA34_32485 (ligA)
DNA replication proteins [BR:
spiq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OHA34_32485 (ligA)
DNA repair and recombination proteins [BR:
spiq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OHA34_32485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OHA34_32485 (ligA)
MMR (mismatch excision repair)
DNA ligase
OHA34_32485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OHA34_32485 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WUU89123
LinkDB
All DBs
Position
6980011..6982179
Genome browser
AA seq
722 aa
AA seq
DB search
MTLSEGVPVKAARRHSELTEQIDEGNYRYYVLDDPTLSDADYDRLMRELKALEDDHPELV
TPGSPTQRVGAPLVTDFATVEHLERMQSLDNAMNADELVAWDERVLKEVGTVAGYLCELK
IDGLAIALVYEGGRLVRAVTRGDGRTGEDVTLNVRTIGAVPSRLEGAGWPEVLEVRGEVF
LPVEGFEQVNAGLVEAGKEPFANPRNAAAGSLRQKDPRVTARRPLGMLVHGFGAWRGGAQ
PDGQSGAYELMRGWGLPVSDRYKVVDGLDAVRDYIAYCGEHRHETAYEMDGVVVKVDQFA
LQRRLGSTSRAPRWAIAWKYPPEEVNTRLLDIKVGVGRTGRVTPYGVMEPVKVAGSTVER
ATLHNASEVRRKGVLIGDTVVLRKAGDVIPEIVAPVTGLRDGSEREFEMPARCPECGTEL
AYEKEGDADIRCPNARFCPGQLRERLFFLASRKALDIEALGYVAATALTQPLEPSDPPVK
NEGDLFHLSVDRLLPIKSLVLDPDTGTPRTDPKTGDPKVVTFFANKEGEPKKTVGTLFEE
LEKAKAQPLWRVLVALSIRHVGPSAAQDLARELRSLDAIASATEEELAAVDGVGPTIAAT
VRAWFEVDWHREIVDKWRAAGVRMRDEGEAGPRPLDGVSVVITGSLEGFSRDSATEAVQR
LGGKVSGSVSKKTGFVVAGDSPGSKYDKAVKLGVPLLDEAGFRILLSDGPDSAKNVTQRG
DG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgagcgaaggcgttccggtgaaggcggctcggcggcacagcgagctgaccgag
cagatcgacgagggcaactaccgctactacgtgctcgacgacccgacgctgagcgacgcc
gactacgaccggctgatgcgcgagctgaaggcactggaggacgaccatcccgagctggtc
accccgggctccccgacgcagcgggtcggcgcgccgctggtcaccgacttcgcgaccgtc
gagcatctggagcggatgcagagcctcgacaacgcgatgaacgccgacgagctggtcgcc
tgggacgagcgggtcctcaaggaggtcggcacggtcgccggctacctgtgcgagctgaag
atcgacgggctggccatcgcgctggtctacgagggcggccggctggtccgcgcggtcacc
cggggcgacgggcggacgggtgaggacgtcacgctcaacgtccgcacgatcggcgccgtc
ccgtcccggctggagggggcgggctggcccgaggtgctggaggtccgcggcgaggtgttc
ctgccggtcgaggggttcgagcaggtcaacgcggggttggtcgaggccggcaaggagccg
ttcgccaacccgcgcaacgccgccgcggggtcgctgcggcagaaggatccgcgggtcacc
gcccgccgcccgctcggcatgctggtgcacgggttcggcgcgtggcggggcggtgcgcag
ccggacggccagtccggggcgtacgagctgatgcgcggctggggcctgccggtcagcgac
cgctacaaggtcgtcgacggcctcgacgcggtgcgcgactacatcgcctactgcggcgag
caccggcacgagacggcctatgagatggacggcgtggtcgtcaaggtcgaccagttcgcg
ttgcagcgcaggctggggtcgacctcgcgcgccccgcgctgggcgatcgcctggaagtac
ccgcccgaagaggtcaacaccaggctgctcgacatcaaggtgggcgtgggccgcaccggg
cgcgtcaccccgtacggcgtgatggagccggtcaaggtcgccggttccaccgtcgagcgc
gccaccctgcacaacgcgagcgaggtcaggcgcaagggggtgctgatcggcgacaccgtg
gtgctgcgcaaggcgggcgatgtgatccccgagatcgtcgcgccggtgaccgggctgcgc
gacgggtccgagcgcgagttcgagatgccggcgcgctgtcccgagtgcggcaccgaactg
gcctacgagaaggagggcgacgccgacatccgctgccccaacgcgcggttctgcccgggg
cagcttcgcgagcggctgttcttcctggcgagccgcaaggcgctcgacatcgaggcgctc
ggctacgtcgcggcgaccgcgctgacccagccgctggagccgagcgatccgccggtgaag
aacgagggcgacctgttccacctgagcgtcgaccggctgctgccgatcaagagcctggtg
ctcgaccccgacaccggcacgccccgcaccgaccccaagaccggcgaccccaaggtcgtc
acgttcttcgccaacaaggagggcgagccgaagaagaccgtcggcacgctcttcgaggag
ctggagaaggccaaggcgcagccgctgtggcgggtgctggtcgcgctgtcgatccggcac
gtggggccgtcggccgcccaggacctcgcgcgcgagctgcgctccctcgacgcgatcgcg
agcgcgaccgaggaggagctggcggcggtcgacggggtggggccgaccatcgcggccacc
gtgcgggcgtggttcgaggtcgactggcatcgcgagatcgtcgacaagtggcgggccgcc
ggggtgcggatgcgcgacgagggcgaggccgggccgcgcccgctcgacggcgtcagcgtg
gtgatcaccgggtcgctggaggggttcagccgcgactcggcgaccgaggcggtgcagcgg
ctcggcgggaaggtctccgggtcggtgtcgaagaaaacgggcttcgtcgtcgcgggcgac
agccccgggtcgaaatacgacaaagccgtcaagctgggcgttccgctcctggacgaggcc
gggttccgaatcctgctgtccgatgggccagattcggccaaaaacgtaacccagcgcggg
gacggataa
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