KEGG   Spirosoma pollinicola: CWM47_07670
Entry
CWM47_07670       CDS       T05236                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
spir  Spirosoma pollinicola
Pathway
spir03030  DNA replication
spir03410  Base excision repair
spir03420  Nucleotide excision repair
spir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CWM47_07670
   03410 Base excision repair
    CWM47_07670
   03420 Nucleotide excision repair
    CWM47_07670
   03430 Mismatch repair
    CWM47_07670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spir03032]
    CWM47_07670
   03400 DNA repair and recombination proteins [BR:spir03400]
    CWM47_07670
Enzymes [BR:spir01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CWM47_07670
DNA replication proteins [BR:spir03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CWM47_07670
DNA repair and recombination proteins [BR:spir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CWM47_07670
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CWM47_07670
   MMR (mismatch excision repair)
    DNA ligase
     CWM47_07670
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CWM47_07670
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 Auto_anti-p27 Nlig-Ia Zn_ribbon_Top1 Zn_Ribbon_TF Zn_ribbon_ACC HVO_2753_ZBP
Other DBs
NCBI-ProteinID: AUD01709
UniProt: A0A2K8YVT6
LinkDB
Position
1802401..1804446
AA seq 681 aa
MNPQERIAELTTLLNYYNHQYYQNSVSEVDDFSFDKLLAELTNLETQYPDLRLSASPTAR
VGGTISKEFKTVFHRFPMLSLGNTYSEEDLIEFDKRVQKGLNGQSYDYICELKFDGVALS
LTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRVHADSVPALFEVRGEGFLPLAEFE
RINKEREDIGEALLANPRNAASGTFKQQDSAAVAKRRLDCFLYSFLSDVDVFDTHEESLI
ALKGWGFNVSQTWKKCADIRDVMLYINEWETKRFDLPLNTDGIVIKVNRYDQQRDLGYTA
KSPRWAIAFKYKAMAASSVLNGIRYQVGRTGAVTPVALLTPVLLAGTVVKRASLHNSNEI
ERLGIMLHDTVFVEKGGEIIPKITGVDLTRRTGQSQPIVYPTTCPACGTPLIRKEGEANF
YCPNERGCPPQRQARFEHFIQRRAMNIESLGEGKIELLIDRGLVQTPADLYKLTVTDLLG
IEKIFLDEETGKKRIVSFREKTVENILTAIERSKAQSLPNVLFALGIRYVGNTTAEKLAD
YFGSMDAIMNASSEALLAVPDTGPRIAESIVAWFADAENREYVEGLRAAGLQFVGEKKMV
EQEGDSLTGKTFLYTGTFENFSREELESRIEANGGRLLSGISKKLNYLIVGENAGPSKVE
KAKKLNVPMIGEDEFMAMLVM
NT seq 2046 nt   +upstreamnt  +downstreamnt
atgaatccccaggaacgcattgccgaactgactactcttctgaactattataaccatcaa
tactaccagaatagtgtttcggaagtagatgacttttcattcgataaactgctggctgag
ttgacgaatctggaaacacaatacccagacctgcgtttgtctgcttcccccaccgcccgg
gtaggcggcaccattagtaaagaattcaaaacggtgttccaccgttttccgatgctttca
ttgggcaatacctattctgaagaagacctcattgagttcgataaacgtgtgcagaaaggc
ttgaatggccaatcctacgactatatatgtgagctgaaattcgacggtgtagccctgagc
ctgacgtacgaaaacggcgtattggtgcagggagccactcggggtgatggcgttcggggc
gacgatataaccaataacatccgaactattcgcacggtgccactgcgggtacatgccgat
agtgttccggctttgttcgaagtgcggggcgagggatttttacccctggcagagttcgag
cggatcaataaagaacgcgaagatattggtgaggctttattagcaaatcccagaaatgcc
gcttccggcacatttaaacagcaggattcggccgcggtggccaaacgacgtctggattgc
tttttgtattcatttttgtcggatgtcgatgtattcgacacgcacgaagaaagcctgatt
gcgttgaaagggtggggcttcaatgtgtctcaaacctggaaaaaatgcgctgatattcgg
gacgtgatgctttacataaatgagtgggaaaccaaacgattcgacctcccgcttaatacc
gatggcattgttattaaagtgaaccgctacgatcagcaacgcgatctgggctacacagcc
aaaagtccgcgctgggcaatcgctttcaaatacaaggcaatggctgcaagtagtgtgttg
aacggcattcgatatcaggttggcaggacgggagctgttactcccgttgccttattaact
cccgtgttgctggcaggtactgttgtaaagcgggcatcgcttcataattcgaacgaaatc
gaacgactggggataatgctgcacgacacggtttttgtagagaaggggggcgaaattatt
ccgaaaattacgggtgtcgacttgactcgtcgcaccggacagagccagccaattgtttac
ccgaccacttgtccggcctgcggaacgcccctgattcggaaggaaggcgaggccaatttt
tactgcccgaacgagcgggggtgtccaccccagcggcaggcgcggttcgagcattttatc
cagcgtcgggccatgaacatcgagagcctgggtgaaggtaaaatcgaactgctcattgat
cggggattggtgcaaacgcccgccgatttgtataaactcacggttactgatttgttgggt
atcgaaaaaatatttctcgatgaggagactggcaaaaagcgcattgtcagttttcgtgaa
aaaacggttgagaatattttaactgccatcgagcggtcgaaagcgcaatcgctgccaaat
gtattattcgccctcggcatacggtatgtgggtaataccaccgccgaaaaactagccgat
tatttcgggtcaatggatgccattatgaatgccagttcggaagccctgcttgcggtaccg
gataccggccctcgaattgccgagagcattgtagcgtggtttgccgatgccgaaaaccgg
gagtatgtcgaagggctccgggcggccggattgcaatttgttggggagaaaaaaatggtg
gagcaggagggggattcactcacgggcaaaacgtttttgtacaccggcacatttgaaaat
ttcagccgcgaagaacttgaatcacgcattgaggcaaatggcggtcggcttctgagtggg
atttccaaaaagctgaattacctgatcgtcggcgaaaatgcagggccatcgaaggttgaa
aaagcaaaaaaactcaacgtccccatgattggcgaagatgagtttatggccatgctggtg
atgtaa

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