Spiribacter curvatus: SPICUR_03395
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Entry
SPICUR_03395 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03030
DNA replication
spiu03410
Base excision repair
spiu03420
Nucleotide excision repair
spiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPICUR_03395
03410 Base excision repair
SPICUR_03395
03420 Nucleotide excision repair
SPICUR_03395
03430 Mismatch repair
SPICUR_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spiu03032
]
SPICUR_03395
03400 DNA repair and recombination proteins [BR:
spiu03400
]
SPICUR_03395
Enzymes [BR:
spiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPICUR_03395
DNA replication proteins [BR:
spiu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPICUR_03395
DNA repair and recombination proteins [BR:
spiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPICUR_03395
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPICUR_03395
MMR (mismatch excision repair)
DNA ligase
SPICUR_03395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPICUR_03395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Zn_ribbon_RRN7
DUF7340
Motif
Other DBs
NCBI-ProteinID:
AGY91672
UniProt:
U5T690
LinkDB
All DBs
Position
679890..681908
Genome browser
AA seq
672 aa
AA seq
DB search
MTGADATAAERAASLRKQLEYHNHRYYVRDDPAISDAEYDRLMAELIDIERRSPDLQTDD
SPTQRVGSAPLAAFEELAHGEPMLSLANAFSEADLTDFDRRLRETLGVGEIEYMAEPKLD
GLSVNLRYEDGQLVAAATRGDGRVGEAITANARTIRSVPLRLQCADPPARVEVRGEVVIR
RQDFERLNERRLAHGERPFANPRNAAAGSLRQLDSRMTARRPLTLFVFGVGESSASLPTT
HEAVLERLGQWGFRVNDQVRRVTGADGCLAYRERLIEARDGLDYEIDGVVYKVNDRLVWE
RLGATARAPRWALAHKLPAREATTQVNAIMPSVGRTGVITPVADLEPVEVGGVTVTRATL
HNLDEVRRKDVRESDAVMVRRAGDVIPEVVSVIESRRPAHTHPWQMPPACPVCGSDVVRI
DDEAAHRCMGGLYCPAQRMGALMHFVSRRAMDIDGLGEKLIEQLVSRERVQTAADLYALT
RSDLLGLERMGERSTTNLLNAIDASRETTLPRFLYALGIDQVGEVTARTLATHFGGLDGL
IAADDDALTAVPDVGPVVAESVRRFFAQPHNREVIDALIAAGVHWPSSASTPPSAQSLPL
EGKTFVLTGTLSAYTRDEAKARIEALGGRVTASVSGRTDYVVAGADAGSKRDRAEKLGVT
LLDESGFTALVG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggggctgacgcgacggccgccgaacgggccgcgagccttcgcaaacagctggaa
tatcacaaccaccgctattacgtccgggatgatccggccatctctgatgccgaatacgat
cgactgatggcggagctgatcgacatcgagcgccgaagtcccgacctgcagaccgatgat
tcgccgacccagcgcgttggctcagcgccgctcgcggcattcgaggagctcgcccatggc
gagccgatgctgtccctggccaatgcattcagcgaggccgatctcactgatttcgaccgg
cgcctgcgcgagacgctgggcgttggcgagatcgagtatatggctgagcccaagctcgat
ggtctgtcggtcaaccttcgctatgaggacgggcagctcgtcgcagcggcaacgcgtggg
gatggccgagtcggcgaggcaattaccgctaacgcccgcacgatccgcagtgtgccgctg
cgactgcaatgcgcggacccgcccgcccgtgtggaggtgcgcggcgaggtcgtgatccgc
cgccaggacttcgagcgactcaatgagcgtcgattggcgcacggtgagcggcccttcgcg
aacccccgcaatgctgcggcgggcagcctgcgacagcttgactcgcgcatgaccgcgcgt
cgaccgctgacgctgttcgtgttcggtgttggtgagtccagcgcgtccctcccgacaacg
cacgaggccgtactcgagcggctggggcagtgggggtttcgcgtcaacgaccaggttcgc
cgcgtcacgggtgcggacggttgcctggcctatcgtgagcggctgatcgaggcgcgcgat
ggcctcgattacgagatcgatggcgtggtctacaaggtcaacgatcgccttgtctgggag
cgactcggcgccactgcccgagcgccacgctgggcactggcgcacaagcttccggcacgc
gaggccaccacccaggtcaatgccattatgccctccgtaggccggaccggggtcattact
ccggtcgccgacctggagcccgtggaggtcggcggtgtgacggtcacccgcgcgacactg
cataaccttgacgaggttcggcgcaaggatgtccgtgagtcagacgcggtgatggtcagg
cgggccggtgatgtgatccccgaagtggtcagtgtgatcgagtcgcggcggccggcgcat
acccatccctggcagatgccgccggcctgccccgtctgcggttccgacgtggtgcgcatc
gatgacgaagcggcgcatcggtgcatgggagggctttactgccccgcgcaacggatgggg
gcgctcatgcactttgtctcgcgccgcgccatggacatcgacgggctgggcgagaaactg
attgagcagctggtctcgcgggaacgggtccagacggcggctgatctctatgcgcttacc
cgcagtgacctgctgggccttgagcgtatgggcgagcgctcgaccaccaatcttctcaat
gccattgatgcctcgcgggagacgacgctgccacgatttctctacgccctcgggatcgat
caggtgggtgaggtgaccgcgcggacgctggcgacgcattttggtgggcttgatgggctg
atcgcggccgacgatgatgcccttacggcggtgcccgatgtcggcccggtcgtcgcggaa
tcggtgcggcgattcttcgctcagccgcataatcgcgaggtcatcgacgccctgatcgcc
gccggtgttcattggccgtcgtcagcgtccacgccgccgtcggcgcagtcgctacccctt
gaaggcaagaccttcgtgctcaccgggacactgtccgcttacactcgcgatgaggctaag
gctcggattgaggcactgggcggcagggtgaccgccagcgtttccgggcggacggattat
gtggtggctggtgcggatgctggatccaagcgcgaccgggccgaaaaactcggtgtgacg
ctactggacgaatcgggcttcacagccctggtggggtag
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