Sphingopyxis sp. J-6: V6U71_05495
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Entry
V6U71_05495 CDS
T10764
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj00300
Lysine biosynthesis
spjj00550
Peptidoglycan biosynthesis
spjj01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
V6U71_05495
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
V6U71_05495
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spjj01011
]
V6U71_05495
Enzymes [BR:
spjj01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
V6U71_05495
Peptidoglycan biosynthesis and degradation proteins [BR:
spjj01011
]
Precursor biosynthesis
Amino acid ligase
V6U71_05495
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
TPR_9
VP1_protrusion
Motif
Other DBs
NCBI-ProteinID:
XMG41514
LinkDB
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Position
1130701..1132140
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AA seq
479 aa
AA seq
DB search
MRLAALLDDQRLAGADPVVTGLAIDHRKVAPGTVFGAFVGERFNGEDFIAEAIAAGAIAV
VARPEAKVDGAVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRM
AGFNAASIGTLGITTSQDSASTGLTTPDIVTFLGNMAGLAAEGVTHAAFEASSHGLDQYR
TEGLKVKAAAFTNLSHDHLDYHGTMDAYLAAKLRLFAEVVEADGSAVVWADDQYSPAVID
AVKARGVRLVTVGAVGTDLRLVSREPTQLGQSLVIAAGDATWKVDLPLIGAYQVANALVS
AGLVIATGGDVGQTLANLARLQPVRGRLERAAITKAGAPVYIDYAHTPDAIEAALDALRP
HAAGRLILVFGAGGDRDQAKRPEMGRVAAAKADLAIVTDDNPRGEDAALIRAAIAEGAPD
ARNIGDRRAAIAAAIAEAGADDIVCIAGKGHEQGQIVGRGDAMRVIPFDDVAVAREEAA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctggcggcgctgctcgacgatcaacggctggcaggcgccgacccggtggtgacc
gggcttgccatcgaccatcgcaaggtcgcgccgggaacggtcttcggcgccttcgtcggc
gagaggttcaacggcgaggatttcatagcagaggcgatcgcggcgggggcgattgcggtc
gtcgcgcggcccgaggcgaaggtcgatggcgcggtgcatgtcgccgatgccaatccgcgc
cgggcctttgcgcatatcgccgcgcgcttcttccatcgctttcccgcgacctgcgtcgcg
gtgacgggtaccaacggcaagacctcgaccgtcgagatgacgcgccagttgtggcgcatg
gccggattcaacgccgcatcgatcggcacgctcggtatcacgacgtcgcaggacagcgcc
tcgaccgggctgacgacccccgacatcgtgaccttcctcggcaatatggcgggcctcgcg
gccgagggtgtgacgcacgcggcgttcgaggcgtcgagccatggcctcgaccagtatcgc
accgagggattgaaggtgaaggcggcggccttcaccaacctcagtcacgaccatctcgat
tatcatggcacgatggacgcctatctcgccgccaagctgcggctgttcgccgaggtcgtc
gaggcggacggaagcgcggtggtgtgggccgacgaccaatattcgccggcggtaatcgat
gcggtgaaggcgcgcggcgtgcggctggtgaccgtcggagcagtgggcaccgacctgcgc
ctcgtctcgcgtgagccgacgcaactggggcaatcgctggtgattgcggcgggggacgcg
acctggaaggtcgatctaccgctgatcggcgcctatcaggtcgccaatgcgctcgtgtcg
gcagggctggtgatcgcgacgggcggcgatgtcggccagacgctggccaacctcgcgcgt
ctccagccggtgcgcgggcgtctcgaacgcgctgcgatcacgaaagccggcgcgcccgtg
tatatcgactatgcccacacgccggatgccatcgaggcggcgctcgacgcgctgcgcccg
catgcggcagggcggctgatcctcgttttcggcgcaggcggcgaccgcgatcaggccaaa
cggccggagatggggcgggttgccgccgccaaggccgaccttgcgatcgtcaccgacgac
aatccgcgcggcgaggacgcggcgctgatccgcgccgcgattgccgagggcgcccccgac
gcgcggaatatcggcgaccgccgcgccgcgattgccgcggcgattgccgaggcgggcgcc
gacgatatcgtctgcatcgcgggcaaggggcacgagcagggccagattgtcggtcgcggc
gacgcgatgcgcgttatcccgttcgacgacgttgcggtcgcgcgcgaggaggcggcatga
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