Shewanella pealeana: Spea_1689
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Entry
Spea_1689 CDS
T00606
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spl
Shewanella pealeana
Pathway
spl03030
DNA replication
spl03410
Base excision repair
spl03420
Nucleotide excision repair
spl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spea_1689
03410 Base excision repair
Spea_1689
03420 Nucleotide excision repair
Spea_1689
03430 Mismatch repair
Spea_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spl03032
]
Spea_1689
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_1689
Enzymes [BR:
spl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spea_1689
DNA replication proteins [BR:
spl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spea_1689
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spea_1689
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spea_1689
MMR (mismatch excision repair)
DNA ligase
Spea_1689
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spea_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABV87013
UniProt:
A8H376
LinkDB
All DBs
Position
2052358..2054364
Genome browser
AA seq
668 aa
AA seq
DB search
MPAIQNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCRPDSPTQ
RVGGEALAKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIVDKTGKDLSYCCEPKLDGLAVS
IVYRDGVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVIMPHKAFD
ALNERARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWELADSHY
GQLEQLRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQIAHQLSL
GFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHN
ADEIARLGVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDIVFPAHCPVCDSEVERVEG
EAVTRCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFRLTAS
AMTMLERMGMKSATKLVAAIEVAKQTTFARFLYALGIREVGEATAANLAAYFKTLEALKA
ASAEEFIKVDDVGTIVAAHLAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLSLKGQT
WVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDE
EALIAILS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgccagctattcaaaacgaaattgctcagctaactgctgaactcaatcaacataactat
cgctattatgtcgatgacagtccttctattcccgatgccgagtacgaccgtttattgaat
aggcttaaagccttagagactgagcatccagagttttgtcgacctgactcgccaacacaa
agagttggaggcgaggcattagctaaattcgagcaaattaaacacttaaagccaatgttg
agcttagataacgtgtttgatgagcaagagttcactgcattcaatcaacggatcgtcgat
aaaacaggcaaagacttaagctactgctgtgagcctaagcttgatggactcgcggtgagt
atcgtctatcgtgatggcgtatttgagcgagccgctacccgcggcgatggccaaactggc
gaagacattactgagaacgttcgcaccattaaatcgatcccgttaacactacgtggtgat
aacttcccgccattggttgaggtgcgcggtgaggtgattatgcctcataaagcattcgat
gctctcaacgagcgcgctcgagtaaaaggggataagctatttgttaaccctcgcaatgct
gccgctggtagtttacgccagctcgatagtaagatcaccgccagtcgcgcccttggtttc
tatgcctacgccttaggtgtggtagagcctgaaacatgggagcttgctgatagtcattat
ggtcaacttgagcagctgcgatcatggggcgttcctgtgagccaagaggttagggggtgt
gagaccgttgccgaggtgatggcttattattacgatattcaacagcgccgtagcagcctt
gagtttgaaatcgatggtgtggtcgtaaaagtcaatcaaatagcccatcagctcagccta
ggtttcgtggccaaggcgccgcgctgggcgacagcgtttaaatttccggcccaagaagag
atgaccctactagaaggtgtcgattttcaagtggggcgtacaggcgccgtcacacctgtg
gctaggctgaaacctgtgtttgtcggtggcgttaccgtatcgaatgcaacactccataat
gccgatgaaattgcacgactcggcgttaaggtcggtgacaccatcatcatccgccgcgcc
ggtgacgtgatcccacaaattgttgccgtagtggcagaaaagcgtccagatgatgctaaa
gatattgttttccctgctcattgtcctgtgtgcgacagcgaagttgagcgtgtagaaggc
gaagccgtgactcgttgcacggggggattattctgtgaagcccagcgtaaggaagctatt
aagcactttgcttcacgtaaggcgctggatatcgatggtatgggcgataaagttgtcgag
caacttatcgataaagagttagttgagagccctgcagatctttttagactcactgcatcg
gccatgactatgcttgagcgtatgggaatgaagtcggcaactaagttagtggccgcgata
gaagtggcaaaacagacgacgtttgcacgattcctttatgcattgggtattcgcgaagtg
ggtgaggcaaccgcagctaatcttgctgcctactttaagacattagaagcccttaaggcg
gccagtgcagaagagttcatcaaagtcgatgatgttggcactattgtggcggcgcaccta
gcgcacttcttagctcagccgcataaccttgaggttatcgacaagctagttgaggccggg
atccattggcctgctgttgaagaggttgctgaagaagacctctcgcttaaagggcagact
tgggtattaacaggcaccttgacccagctaaaccgtaatgatgctaaggctaaattgcag
gcattaggggcaaaagtggcagggagtgtgtcgaaaaataccgactgtctagtcgctggc
gctgcagcgggttctaagttgactaaggcacaagagcttggcgtcaaggttatcgatgaa
gaagccttgattgcaattctctcataa
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integrated database retrieval system
