Streptomyces platensis: CP981_27300
Help
Entry
CP981_27300 CDS
T07341
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spla
Streptomyces platensis
Pathway
spla03030
DNA replication
spla03410
Base excision repair
spla03420
Nucleotide excision repair
spla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP981_27300 (ligA)
03410 Base excision repair
CP981_27300 (ligA)
03420 Nucleotide excision repair
CP981_27300 (ligA)
03430 Mismatch repair
CP981_27300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spla03032
]
CP981_27300 (ligA)
03400 DNA repair and recombination proteins [BR:
spla03400
]
CP981_27300 (ligA)
Enzymes [BR:
spla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP981_27300 (ligA)
DNA replication proteins [BR:
spla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP981_27300 (ligA)
DNA repair and recombination proteins [BR:
spla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP981_27300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP981_27300 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP981_27300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP981_27300 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
HMBD
Motif
Other DBs
NCBI-ProteinID:
QEV54845
LinkDB
All DBs
Position
6136941..6139154
Genome browser
AA seq
737 aa
AA seq
DB search
MAGEHAAESGVPAAAREKHAQLAEQIEEHRFRYYVKDAPVISDAEFDKLLRSLEALEDEH
PELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDDEELAGWAERIAGELGGDPKSA
KYHFLCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGDRIPD
LVEVRGEVYFPMEKFLDLNERLVADGKPPFANPRNAAAGSLRQKDPKVTAGRPLHMVVHG
VGAREGLEIDRQSEAYDLLKEWGLPTATHNRVVDSLEAVREFIDHYGDAERRRTAVEHEI
DGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVVE
PVTVAGSEVEFATLHNQDVVKAKGVFIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFVM
PAECPECGTALQPAKEGDIDLRCPNARACPAQIRERLFYLAGRKCLDIENFGYVAATALS
QPLEPAEPPLKDEGDLFGLSIEQLLPIKSYVLDPDSGLPKRDPKTGEEKVVTFFANQKGE
PKKNALAMLENIQAAKQRPLARIITGLSIRHVGPVAAEALAREFRSIDRIREADETELAA
VDGVGGTIAASLKQWFAVDWHQQIIESWRAAGVRMEEEQTGEEGPRPLEGVTVVVTGTLQ
SHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLLE
QGPDAARDVAVTPPEEE
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacacgcagcggaatccggggtgcccgcagcggcgcgggagaagcacgcg
cagctcgctgagcagatcgaggagcatcgcttccggtattacgtgaaggatgccccggtc
atcagtgacgcggagttcgacaagctgctgcgctccctggaggccctggaggacgagcac
cccgagctgcgcacccccgattccccgacccagaaggtcgccggggcctatgccacggag
ttcaccgaggtcgagcaccgcgaacggatgctctcgctcgacaacgccttcgacgacgag
gagttggcgggctgggccgagcggatcgccggtgaactgggcggcgaccccaagagcgcc
aagtaccacttcctgtgcgagctgaaggtcgacggtctcgccgtcaacctcacctacgag
cagggccggctgacccgcgccgccacccgcggcgacggccgtacgggcgaggacatcacc
cccaatgtccgtacgatcgccgagatcccgcaccgcctgaagggcgaccggatcccggac
ctggtcgaggtgcgcggggaggtctacttcccgatggagaagttcctcgacctcaacgag
cggctggtggccgacggcaagccgccgttcgccaacccccgtaacgccgcggccggttcg
ctgcgccagaaggaccccaaggtcaccgccggccgcccgctgcacatggtcgtccatggc
gtcggcgcccgcgaaggcctggagatcgaccgccagtcggaggcgtacgacctgctcaag
gagtggggcctgccgacggccacgcacaaccgggtcgtcgactccctggaagccgtacgg
gagttcatcgaccactacggcgacgccgagcggcgccgcacggccgtcgagcacgagatc
gacggcgtggtcgtcaagctggacgagatccggctccaggggcggctgggctcgacctcg
cgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaagctg
gtcgacatccgcgtcggcgtcggccgtacgggccgggtcacgccgtatgccgtggtcgag
ccggtgaccgtggccggctcggaggtggagttcgccactttgcacaaccaggacgtggtc
aaggccaagggcgtgttcatcggggacaccgtcgtcatccgcaaagccggcgacgtcatc
ccggagatcctgggcccggtcgtcgatctgcgggacggcagcgagcgggagttcgtgatg
cccgccgagtgccccgagtgcgggacggcgctccagcccgccaaggaaggcgatatcgac
ctgcggtgccccaacgcccgcgcctgccccgcccagatccgtgagcggctgttctacctc
gccggccgcaagtgtctggacatcgagaatttcggctatgtcgcggcgacggcactcagc
cagccgctggagcccgcggagccgccgctgaaggacgaaggcgatcttttcggcctttcc
atcgaacagctgctgcccatcaagtcgtatgtcctcgaccccgattccggtctgcccaag
cgcgacccgaagaccggcgaggagaaggtcgtcaccttcttcgccaaccagaagggcgag
cccaagaagaacgccctggccatgctggagaacatccaggcggccaagcagcgcccgctg
gcccggatcatcaccgggctgtcgatccggcatgtgggcccggtggcggcagaggcgctg
gcacgggagttccgctcgatcgaccgcatccgggaggcggacgagacggagctggccgcc
gtcgacggtgtcgggggcaccatcgccgcctccctgaagcagtggttcgccgtggactgg
caccagcagatcatcgagagctggcgggccgcgggcgtccgaatggaggaggagcaaacg
ggtgaggagggcccgcggccactggaaggcgtcaccgtcgtggtaacgggcacacttcag
tcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgaccggt
tccgtttcgaagaagaccggattcgtagtggtgggcgacaaccctggttcgaagtacgac
aaggccatgcagttgaaggtccccgtgttggacgatgatggcttcgcggtgctgctggag
cagggtcctgacgcagcgcgagacgtagctgtcactccacctgaggaggagtga
DBGET
integrated database retrieval system
