Sulfuriferula plumbiphila: SFPGR_24460
Help
Entry
SFPGR_24460 CDS
T06621
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb03030
DNA replication
splb03410
Base excision repair
splb03420
Nucleotide excision repair
splb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFPGR_24460 (ligA)
03410 Base excision repair
SFPGR_24460 (ligA)
03420 Nucleotide excision repair
SFPGR_24460 (ligA)
03430 Mismatch repair
SFPGR_24460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splb03032
]
SFPGR_24460 (ligA)
03400 DNA repair and recombination proteins [BR:
splb03400
]
SFPGR_24460 (ligA)
Enzymes [BR:
splb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFPGR_24460 (ligA)
DNA replication proteins [BR:
splb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFPGR_24460 (ligA)
DNA repair and recombination proteins [BR:
splb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFPGR_24460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFPGR_24460 (ligA)
MMR (mismatch excision repair)
DNA ligase
SFPGR_24460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFPGR_24460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BBP05024
LinkDB
All DBs
Position
complement(2368530..2370554)
Genome browser
AA seq
674 aa
AA seq
DB search
MPVPAEIAERARLLREQIEYHNYRYYALDAPVIPDAEFDRLLRELLALETQYPELVTPDS
PSQRVGAAPVAAFSQIAHRVPMLSLNNAFSDTEIEAFDRRCREATGLAQVEYAVEPKFDG
LAITLSYEHGRFVQGATRGDGYTGEDVTANLRTIRAIPMLLGIDQPPALLEVRGEVLMLK
ADFAALNAAQRARGDKEFANPRNAAAGSLRQLDPRITATRRLHFFAYGIGAAEGWAVPGR
HAALMDQLLAMHLPVARQRGVVRGVSGLLDYYRNIGASRAQLPYDIDGVVYKVNDLALQE
KLGFVARAPRFAIAHKFPAQEELTQVLEIDVQVGRTGALTPVARLAPVFVGGVTVTNATL
HNEDEIRRKDVRIGDWVSVRRAGDVIPEVVSVVLARRPADAREFVMPLSCPVCGSHVVRL
PDEAVARCSGGLYCPAQRKQALWHFASRRAMDIDGLGEKLVEQLVDLGLVNSPADLYRLG
MVKLASLERMAEKSAAKLLAAIEASKHTTLARFIYALGIRNVGEQTAKDLARYFGNLDAL
MAADEAALLQVPDVGPVVAQSIAQFFAEPHNRTVIEMLRASGVSWPEGAPAVPTQTSAIA
GKTFVLTGTLPKLSRDDARERIEAQGGKVSGSVSKKTDYVVAGVDPGSKYTKAQELGVKI
LDEAALLELLGSIE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgccagttccagccgagattgccgaacgcgcccgcctgctgcgcgaacagatcgaatac
cacaattaccgttactacgcgctcgacgcgccagtgattccagacgccgaattcgaccgc
ctgctgcgtgagttgctggcgcttgaaacgcaatacccagagctggttacgccggattct
cccagccagcgcgtgggtgcagcgccggttgcggcattttcccagatcgctcaccgcgtc
cccatgttatcgctcaacaatgcctttagcgacacggagatagaggcttttgatcgccgt
tgccgcgaggcaaccggactggcgcaggttgaatacgcagtggaacccaagtttgatggc
ctggcgattacgctcagttatgagcacggccgttttgtgcagggcgccacgcgcggcgat
ggctacacgggtgaggatgtaaccgccaacctgcgcaccatccgtgcgattcccatgctg
ctgggcatcgatcagccgcctgccttgctcgaagtgcgcggcgaagtactcatgctcaag
gcggatttcgcagcgctcaatgccgcccagcgcgcgcgcggtgacaaggaatttgccaat
ccgcgcaacgcggcggcgggctcattgcgtcaactcgacccgcgcattaccgccacgcgg
cgcctgcactttttcgcttacggcatcggcgcggcagagggctgggccgtcccgggcagg
catgccgccctgatggatcagctgctggcgatgcaccttcccgttgccaggcaacgcggc
gtggtgcggggcgtatccggcttgctggattactaccgtaatatcggagccagccgtgcg
cagttgccctacgacatcgacggcgtggtgtacaaggtcaatgatctggctttgcaggag
aaattgggcttcgtggcgcgtgcgccgcgttttgctattgcgcacaaatttccggcgcag
gaagaactgacccaggttctggaaattgacgtgcaggtcggccgcaccggtgcgctgacg
cctgtggcgcggctcgcacccgtgttcgtcggcggcgtgacggtgaccaacgccacgctg
cataatgaggatgaaatccgccgcaaggacgtgcgcatcggtgactgggtgagtgtgcgc
cgggccggcgatgtcatccccgaagtggtctccgttgtactggcacgccgcccagcggat
gcccgtgaattcgtcatgccactcagctgtccggtgtgcggctcgcatgtggtgcgcctg
ccggacgaggcggtggcgcgctgcagcggcggcctgtattgcccggcgcagcgcaagcag
gcgctgtggcactttgccagccgccgcgcgatggatattgacggcctgggtgaaaagctg
gtcgagcagctagtggatctgggtctggtcaacagcccggcagatctctatcggctaggc
atggtgaaactcgccagtctggaacgcatggcggaaaaatccgctgccaagctgcttgcc
gcgatcgaggccagcaagcacaccacgctggcacgatttatctatgccctgggtatccgc
aatgtgggtgaacagaccgccaaggatttggcgcgttacttcggcaatctcgatgcgctg
atggccgccgacgaagccgcattgctgcaggtgcccgacgtgggaccggtggtggcgcag
tccatcgcgcagtttttcgccgaaccccataaccgcaccgtgatcgagatgttgcgcgcc
agtggcgtgagctggccggagggtgcgccggccgtgcccacccaaaccagcgctattgcc
ggcaagactttcgtgctcaccggcaccttgcccaagctgagccgcgatgatgccagggaa
aggattgaggcgcagggtggcaaggtgagtggcagcgtgtcgaaaaagaccgattacgtg
gtagcaggcgttgatcccggcagcaaatacacgaaggcgcaagaactcggcgtcaaaatt
ctcgatgaagccgcattactggaattattgggcagtatagaatga
DBGET
integrated database retrieval system
