Sphingomonas sp. LK11: AV944_15580
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Entry
AV944_15580 CDS
T04954
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03030
DNA replication
splk03410
Base excision repair
splk03420
Nucleotide excision repair
splk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV944_15580
03410 Base excision repair
AV944_15580
03420 Nucleotide excision repair
AV944_15580
03430 Mismatch repair
AV944_15580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splk03032
]
AV944_15580
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_15580
Enzymes [BR:
splk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AV944_15580
DNA replication proteins [BR:
splk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AV944_15580
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AV944_15580
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV944_15580
MMR (mismatch excision repair)
DNA ligase
AV944_15580
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV944_15580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HTH_Cmi2_C
Motif
Other DBs
NCBI-ProteinID:
APX67019
LinkDB
All DBs
Position
3378090..3380228
Genome browser
AA seq
712 aa
AA seq
DB search
MTAPQTLPQTDLEAAAELNSLAREIAHHNHLYHTEDAPEISDADYDALVRRNTAIEAAFP
HLIRSDSPNSQVGAAPAAHLAKVPHARPMTSLDNAFSDEEVEEFVGRVRRYLKLPEDAPV
TLTAEPKIDGLSCSLRYVDGRLVQALTRGDGAIGEDVTENVRTIADIPQALPDDAPQVFE
VRGEVYMSKADFAALNARLAQEAAETGKEARQFANPRNAAAGSLRQKNPAITAGRPLRFL
AHGWGEASDVPVETQFDMVEAWRRWGFPIADAFARVPDAGAALAIYRTIEAQRADLPFDI
DGVVYKVDRLDWQARLGIVGRTPRWAIAHKFPAERAQTTLEKIDIQVGRTGALTPVARLE
PVTVGGVVVTNATLHNADEIERLGVRPGDRVVLQRAGDVIPQIVENLTRETPREPFIFPD
HCPECGSLATREEGEVVIRCTGGLICPAQRVERLIHFVSRHAFDITGLGLVRVEEFFRDG
LIASPADIFRLHQHREALIQRERMSELVVDKLLAAIDARRDISLDRFLFALGIRHVGEIT
ARDLARRFVSMAGFRAMIDAALQVRAETVPALGEPDRKFELRRQRAIVAAIDTPQIGPEV
ADALLDFFAEAHNRDVVDDLLSEVTPADTVHQTRESEVTGKTLVFTGTLETLSRDEAKAQ
AEALGARVSGSVSAKTDLVIAGPGAGSKLKKAQDLGIRVIDEAAWNDLVAAS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcacctcagaccctgccccagaccgatctcgaagccgccgccgagctgaacagc
ctcgcccgcgagatcgcccatcacaaccacctctatcacaccgaggacgcgcccgagatt
tcggatgcggattatgacgcgctggtccgccgcaacaccgcgatcgaggccgccttcccg
catctgatccgcagcgattcgcccaatagccaggtcggcgccgcccccgccgcgcatctc
gccaaggtgccgcacgcccggccgatgaccagcctggacaatgcctttagtgacgaggag
gtcgaggaattcgtcggtcgcgtccgccgctatctgaagctgcccgaggacgcgcccgtc
accctgaccgccgagcccaagatcgacggcctctcctgctcgctacgctatgtcgacggg
cggctggtccaggcgctgacccgcggcgatggcgcgatcggcgaggacgtgaccgagaat
gtccgcaccatcgccgatattccccaagcactgcccgacgacgcgccgcaggtcttcgag
gtgcgcggcgaggtctatatgagcaaggccgatttcgccgcgctcaacgcccgtctggcg
caggaagccgccgagacgggcaaggaagcccgccagttcgccaatccgcgcaacgccgcc
gccggatcgctgcgccagaagaacccggcgatcaccgccgggcgcccgttgcgcttcctg
gcgcatggctggggcgaagcgagcgacgtgccggtcgagacccagttcgacatggtcgag
gcctggcgccgctggggctttcccatcgccgacgcctttgcccgcgtgcccgatgccggt
gccgcgctggccatctatcgcaccatcgaggcgcagcgcgccgacctgcccttcgacatc
gacggcgtggtctacaaggtcgaccggctcgactggcaggcgcgactggggatcgtcggg
cgcaccccgcgctgggcgatcgcgcacaaattcccggccgagcgggcccagaccacgctg
gaaaagatcgatatccaggtcggccgcaccggcgcgctgacccccgtcgcacggctggag
cccgtgacggtcggtggtgtcgtcgtgaccaacgccacgctgcacaatgccgacgagatc
gagcggctgggcgtccgccccggcgaccgcgtggtcctgcaacgcgccggcgacgtcatt
ccgcagatcgtcgagaacctgacccgcgagacgccgcgcgaacccttcatctttcccgac
cattgccccgaatgcggcagcctggcgacgcgcgaggagggcgaggtcgtcatccgctgc
accggcgggctgatctgcccggcgcagcgcgtggaacgcctgatccacttcgtctcgcgt
cacgccttcgacatcaccgggttggggctggtgcgcgtcgaggaattcttccgcgatggc
ctgatcgcctcccccgccgatatcttccgcctccaccagcatcgcgaagcgctgatccaa
cgcgagcgtatgtccgaactggtcgtcgacaagctgctcgccgccatcgacgcgcggcgc
gacatatcgctcgaccgcttcctcttcgcgctgggcatccgccatgtcggtgagatcacc
gcacgcgacctggcccgccgcttcgtctcgatggcgggcttccgcgcgatgatcgacgcc
gcgcttcaggtgcgtgccgagaccgtccccgcgctgggcgaacccgaccgcaagttcgag
cttcgccgccagcgcgccatcgtggccgccatcgacacaccccagatcggccccgaagtc
gccgacgcactgctcgacttctttgccgaagcgcataaccgcgacgtcgtcgacgacctc
ctgagcgaggtcacgcccgccgacaccgtccaccagacccgcgagtcggaggtcaccggc
aagaccctggtcttcaccggcacgctcgaaaccctgtcgcgcgacgaggccaaggcgcag
gccgaagcgctgggcgcgcgcgtatcgggatcggtctccgccaagaccgacctcgtcatc
gccgggccgggcgccggatcgaagctgaaaaaggcgcaggatctgggcatccgggtgatc
gacgaagccgcctggaacgatctggtcgccgcaagctga
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