Spiroplasma platyhelix: SPLAT_v1c02960
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Entry
SPLAT_v1c02960 CDS
T08168
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
splt
Spiroplasma platyhelix
Pathway
splt03030
DNA replication
splt03410
Base excision repair
splt03420
Nucleotide excision repair
splt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
splt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPLAT_v1c02960 (ligA)
03410 Base excision repair
SPLAT_v1c02960 (ligA)
03420 Nucleotide excision repair
SPLAT_v1c02960 (ligA)
03430 Mismatch repair
SPLAT_v1c02960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splt03032
]
SPLAT_v1c02960 (ligA)
03400 DNA repair and recombination proteins [BR:
splt03400
]
SPLAT_v1c02960 (ligA)
Enzymes [BR:
splt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPLAT_v1c02960 (ligA)
DNA replication proteins [BR:
splt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPLAT_v1c02960 (ligA)
DNA repair and recombination proteins [BR:
splt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPLAT_v1c02960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPLAT_v1c02960 (ligA)
MMR (mismatch excision repair)
DNA ligase
SPLAT_v1c02960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPLAT_v1c02960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
5_3_exonuc
HHH
TSC22
RNA_ligase
DNA_pol_alpha_N
Motif
Other DBs
NCBI-ProteinID:
UJB29060
LinkDB
All DBs
Position
321836..323857
Genome browser
AA seq
673 aa
AA seq
DB search
MTKEELKAIKQEIDDLINKIKQWNYEYYVLDQSSVSDSVYDQHYRKLVALEEQYPQFIRN
DSPTKTVGAQITDSSLRKIAHQVPMLSLANAFNQSDLIKFDQQIKKITSKADVNYVCELK
IDGLSITVTYQDAKLKLAATRGDGTLGEDITENLKEIKTIPITLIDCPIKNLEVRGEVFL
SKNDFQILNQEQKELNLPLFANPRNAAAGTLRQLDKTIVAKRKLDAFLYYYVDALKDGIK
THSEALQQLTKYHFNVNKEWKLCQNIDQVWQYIDDYQSKRNNLAYEIDGIVIKVDDLSLY
QILGNTNKAPRWAIAYKFPAVTTTTKLLEIFPTVGRTGRITYNAKLEPVLLSGSKISYAT
LHNGDYIIEKDLRESDLVEIKKAGDIIPEVIKVIVSARQKDAKKFSKATHCPKCHSVLEQ
VEDEVDQYCVNTNCPARILKSLIHFCSRNAMNITGLKEKILARFLNLKWIHDVADIYQLV
NYRQEIINLEKFGEKSFNNLVSMIIKSKSNSLERLLFALGIRHVGEKNAEILAANFKTLE
NLMKANHQQLSEINDVGPTIATSVIDYFANQDNQQLIKKLAEFKVNFSFIEQEIKQEQIF
TNTTFVITGTLSKSRDYFAGLLKSYGASVTNTISSNTNYLLAGKEPGSKLEKARELNVKI
ISEEELFSIINKK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagaattaaaagcaattaaacaagaaattgatgatttaattaataaaatc
aaacaatgaaattatgaatactatgttcttgatcaatcttcagttagtgatagtgtctac
gatcaacactatcgtaaactagttgcattagaagagcagtatccacagtttattagaaat
gattcaccaacaaaaacagttggtgctcaaataacagattctagtttaagaaaaattgct
catcaagttccaatgttgagtttagcaaatgcttttaatcaatcagatttaattaaattt
gatcaacaaataaaaaaaattactagcaaagctgatgtgaattatgtttgcgaattaaaa
attgatggtctttcaattactgttacttatcaggatgctaagttgaaattagcagcaaca
agaggcgatggtactttaggagaagacatcacagaaaatttaaaagaaattaaaacaatt
ccaataactttaattgattgtccaattaaaaatctagaagttcgtggtgaagttttttta
agtaaaaatgattttcaaattttaaatcaagaacagaaagaattaaatttaccattattt
gctaacccaagaaatgctgctgcaggaactttgcgtcaattagataagacaattgttgct
aagagaaagttagatgcttttctttattactatgttgatgcgcttaaagatgggattaaa
actcatagtgaagctttgcaacaactaacaaaatatcattttaatgttaataaagagtga
aaattatgtcaaaatattgatcaagtgtgacaatatattgatgattatcaatcaaaaaga
aataatttagcatatgaaattgatgggattgtgattaaagttgatgatttaagtttgtat
caaatattaggaaataccaataaagcacctagatgagcgattgcttataaatttcctgct
gtcacaacaacaacaaaattattagaaatttttccaactgtaggaagaacaggacgaatt
acgtataatgctaaattagaaccagttttactttcaggaagtaaaatttcttatgcgact
ttacataatggcgactacattattgagaaagatttaagagaaagtgatttagtagaaatt
aaaaaagctggagacatcattccagaagttatcaaagtgattgttagtgcaagacaaaaa
gatgcaaaaaaatttagcaaagctacgcactgtccaaaatgtcatagtgttttagagcaa
gtagaagatgaagtagatcaatattgtgtcaacactaattgtccagctagaattttgaaa
tctttaattcatttttgttcgcgtaatgccatgaacatcactggtttaaaagaaaaaatt
ctagcaagatttttaaatttaaaatgaattcatgatgtagcagatatctatcaattagtt
aactatcgtcaagagataatcaatttagagaaatttggtgaaaagtcgtttaacaattta
gttagcatgattattaaatcaaagagtaattctttagaacgtttactttttgctttaggg
attcgtcatgttggagaaaagaatgctgagattcttgcagcaaattttaaaactttagaa
aacttaatgaaagcaaaccatcagcaattatcagaaattaatgatgttggaccaacgatc
gcaactagtgttattgattattttgctaatcaagataatcaacaattaattaaaaagtta
gcagaatttaaagttaactttagttttattgagcaagaaataaagcaagagcagattttt
actaatactacttttgttatcacaggtacgctatcaaaaagtcgtgattattttgctggt
ttattaaagagttatggtgctagtgttaccaatacaattagtagcaatactaattactta
ttagcaggcaaagaaccaggatcaaaattagaaaaagctagagaattaaatgtcaaaatt
attagtgaagaagaattattttcaataattaacaagaagtaa
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