Serratia inhibens: Q5A_025220
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Entry
Q5A_025220 CDS
T04576
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sply
Serratia inhibens
Pathway
sply03030
DNA replication
sply03410
Base excision repair
sply03420
Nucleotide excision repair
sply03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sply00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5A_025220 (ligB)
03410 Base excision repair
Q5A_025220 (ligB)
03420 Nucleotide excision repair
Q5A_025220 (ligB)
03430 Mismatch repair
Q5A_025220 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sply03032
]
Q5A_025220 (ligB)
03400 DNA repair and recombination proteins [BR:
sply03400
]
Q5A_025220 (ligB)
Enzymes [BR:
sply01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q5A_025220 (ligB)
DNA replication proteins [BR:
sply03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q5A_025220 (ligB)
DNA repair and recombination proteins [BR:
sply03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q5A_025220 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5A_025220 (ligB)
MMR (mismatch excision repair)
DNA ligase
Q5A_025220 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q5A_025220 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH
RNA_ligase
DNA_ligase_A_M
DUF3701
Motif
Other DBs
NCBI-ProteinID:
ANS45436
LinkDB
All DBs
Position
complement(5388332..5390035)
Genome browser
AA seq
567 aa
AA seq
DB search
MRKCGMRIGMALLGGLMFCGVLRAESCPAWRPERLQLEITTLKNQLERWDVAYYQQGDSL
IEDEVYDSLRQKLQLWHRCAGLERVEEPSPLLPAGKTPHPVAHTGLHKLADPVAVAQWLR
GRSDVWVQPKVDGVAVTLVYRDGELAAAVSRGNGLKGEDWLEKVRAIPSIPAAVKGAPST
LILQGELFLMVNDHQQKLHGGINARARVAGALMKNRLSPVLQQIGLFVWAWPDGPQEMTE
RLQQLAAMGFPLALAYSQSVSSLEDVRQWRERWYREALPFVTDGVVIHQARSPSGHYWQA
KPGDWAVAWKYPPVRQIARVNDVEFSVGRTGKIAVVLRLAPLRMDDKWVSRVNLGSLPRW
RQWAVVPGDQVAISLMGHGIPRLDKVVWRAAERVEPEAPAADRYHALSCFSWLPECRQQF
LARLVWLGGPQGLGLHGVSESTWQALIDRGLVRHLLDWLVLTPEQLMSAPGMGDKRGRSI
HRQFQLARQQPFARWLIALGAPLNPQQARALKNWHQVQQLPAGEWRKMTGIGAKKAEQIA
GFLRHPPFLALVNTLEEQEIAGFAGTR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaatgcggaatgcggatcggaatggcgctgttgggcgggttgatgttttgtggt
gtgctgcgggcagaaagttgcccggcgtggcgaccggagcggctgcaactggagataacc
acgttaaaaaaccagcttgaacgctgggatgtggcttattaccaacagggcgacagttta
attgaagatgaggtctatgacagcctgcggcaaaaactgcagctatggcatcgttgcgcc
gggctggaaagggttgaggagcccagtccgcttttacctgcgggtaaaacgccccacccg
gtggcgcataccgggctgcataaattggcggatcctgtcgccgtggcccaatggctgcgt
ggccgcagcgatgtctgggttcagcctaaggtggacggcgtagccgttactttggtgtat
cgcgatggtgagttggcggcggctgtcagccggggaaatgggctgaagggggaagattgg
ctggaaaaggtgcgtgctattccatcgataccggcggcggtgaagggcgctccgtcgacg
ttgattcttcagggtgagctgtttttgatggtgaacgatcatcagcaaaagcttcatggc
ggcatcaatgcccgagccagggtagccggtgcgctgatgaaaaaccggctttcgccggtc
ttgcaacagataggcctgtttgtctgggcatggccggatggcccacaagaaatgacggag
cgtttacagcagcttgccgcaatgggtttccccctggcattggcttattcacagtccgtg
agttcactggaagacgtgcggcaatggcgcgagcgttggtatcgcgaagcattgcccttc
gtcacggatggcgtggtgattcatcaggctcggtcaccttcggggcattactggcaggca
aagcccggtgattgggctgttgcctggaagtatccgccggtgcggcagatcgccagggtc
aatgatgtcgagttcagcgtaggccgcaccggaaagattgccgtggtgctgaggcttgct
cccctcaggatggatgataaatgggtctcgcgggttaatctgggatcgctgccccgctgg
cggcagtgggcggttgtgcccggtgaccaggtggcaatcagcctgatggggcacgggatc
ccgcgtctggataaagtagtctggcgggccgcagaaagagtagagcctgaagcgccggcc
gcagatcgttaccatgctttgagttgctttagctggctgccggagtgccgccagcagttt
ctggcccggctggtgtggttgggcggcccacaggggttaggcttgcacggcgtcagtgaa
tctacctggcaggcgttgattgatcgggggctggtgcggcatttgctggattggctggtg
ttgacgccggagcaactgatgtcagcgcccggcatgggtgacaagcgtgggcgcagtatc
caccggcaatttcagttggcgcggcaacaaccgtttgctcgctggctgatagcgttaggc
gcaccgcttaacccgcaacaagcacgggcgttgaaaaactggcaccaggtacaacaatta
ccggccggagagtggcgtaaaatgaccgggataggcgccaaaaaggctgagcaaatcgcc
ggctttcttcgacacccgccatttctggcgctggtcaacacgctggaggagcaggaaata
gcgggctttgccggaacccggtga
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