Sphingomonas sp. M1-B02: OKW87_15050
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Entry
OKW87_15050 CDS
T11063
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spmb Sphingomonas sp. M1-B02
Pathway
spmb03030
DNA replication
spmb03410
Base excision repair
spmb03420
Nucleotide excision repair
spmb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OKW87_15050 (ligA)
03410 Base excision repair
OKW87_15050 (ligA)
03420 Nucleotide excision repair
OKW87_15050 (ligA)
03430 Mismatch repair
OKW87_15050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spmb03032
]
OKW87_15050 (ligA)
03400 DNA repair and recombination proteins [BR:
spmb03400
]
OKW87_15050 (ligA)
Enzymes [BR:
spmb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OKW87_15050 (ligA)
DNA replication proteins [BR:
spmb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OKW87_15050 (ligA)
DNA repair and recombination proteins [BR:
spmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OKW87_15050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OKW87_15050 (ligA)
MMR (mismatch excision repair)
DNA ligase
OKW87_15050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OKW87_15050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UZK65809
LinkDB
All DBs
Position
complement(3125635..3127713)
Genome browser
AA seq
692 aa
AA seq
DB search
MTTALPQTDDEAAAELATLAAEIAHHNRRYHSEDAPEISDAEFDALVRRNAAIEAAFPAL
IRADSPSRMVGSAPAAHLSKIAHARPMFSLDNAFSDEDVADFLGRVRRFLSLAPHAPITL
TAEPKIDGLSCSLRYEQGRLVRALTRGDGQVGEDVTANVRTMDDIPDLLPGSVPEIVEVR
GEVYMEKAAFLALNARLLDEAEDPAKARQFANPRNAAAGSLRQKDAGVTAVRPLRFLAWG
WGEVSEDLAAGQYDAMRRIAGWGFPVSDLLVRSDTLDAALAQYRTIEAQRADLPFDIDGV
VYKLDRIDWQARLGFVGRAPRWAVAHKFPAERAQTRLNDIEIQVGRTGKLTPVAKLEPVT
VGGVVVRNATLHNADEIARLGVRPGDRVILQRAGDVIPQIVENLSRDEDRPAYVFPDHCP
RCGSEAVAEEGEVDVRCTGGLICPAQRLERLKHFVSRGALDIEGLGEKTLVEFLDLGWIT
EPADIFRLSEKRDALVGREGWQAKSVDALYAAIEAKRAPDAARLLFGLGIRHVGQITARD
LIKHFTTLPALRAAAEDARAGDADALAEFAAIDGVGPIVVAALGDFFHEAHNIQAWNDLL
DQVAPPPFIVTARDSEVTGMTLVFTGSLESLSRDEAKAQAELLGARVAGSVSAKTDLVIA
GPGAGSKLKKAAELQIRVISEQDWREIVQKSQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgcgctgccccagaccgacgatgaagccgccgccgaactcgcgacgcttgcc
gccgagatcgcgcatcacaaccggcgctaccattccgaggatgcgcccgagatcagcgat
gccgagttcgacgcgctggtgcgccgcaacgcggcgatcgaagcggcttttcccgcgctc
atccgcgccgattcgccctcgcgcatggtgggctccgcgccggccgcgcatctctcgaag
atcgcgcatgcacggccgatgttcagcctcgacaatgccttttcggacgaggatgtcgcc
gattttctcggccgagtccgccgcttcctgagcctcgcgccccatgcgccgatcacgctc
accgcggagcccaagatcgatggcctgtcctgttcgctgcgctacgagcaagggcgcctt
gtccgagcgctcacccggggcgacgggcaggtgggcgaagacgtgaccgccaatgtccgg
acgatggacgacatccccgatctattgccgggctcggtcccggaaatcgtcgaagtgcgc
ggcgaggtctatatggagaaagccgcgttcctcgcgctcaacgcccgcttgctcgacgag
gccgaggacccggcaaaggcgcgccaattcgccaacccgcgcaacgcggccgcgggctcg
ctgcgccagaaggatgccggcgtcaccgcagtgcggccgcttcgcttcctcgcctggggc
tggggcgaagtctcggaggatctggccgccggccagtatgacgcgatgcgccggatcgcc
ggctggggtttcccggtttccgatctgctggtccgtagcgacacgctcgacgcggcactc
gcccaatatcgcacgatcgaggcgcagcgcgccgatctgcccttcgacatcgacggcgtc
gtctacaagctcgatcggatcgactggcaggcgcgactgggcttcgtcggccgcgccccg
cgctgggcggtcgcgcataaatttcctgccgaacgcgcccagacccggctcaacgacatc
gagatccaggtcggccgcaccggcaagctgaccccggtcgccaagctcgaacccgtcacc
gtcggcggtgtcgtcgtgcgcaacgcgacgctgcacaatgccgacgagatcgcccggttg
ggggttcgccccggtgatcgcgtcatccttcagcgcgcgggcgacgtgatcccgcagatc
gtcgaaaatctcagccgcgacgaggatcgcccggcttatgttttcccggatcactgcccg
cgctgcggctccgaagcggtcgccgaggaaggcgaggtggatgtccgctgcaccggcggg
ctgatctgcccggcgcagcggctcgagcggctcaagcatttcgtcagccggggcgcgctg
gatatcgaagggttgggcgaaaagacgctggtcgagtttctcgatctcggctggatcacc
gaacccgcggacattttccgcctgtccgagaagcgcgacgcgctggtcgggcgcgagggg
tggcaggccaagtcggtcgacgcgctctatgctgcgatcgaagccaagcgcgcacccgat
gcggcccggctgctgttcgggctcggcatccgccatgtcggccagatcaccgcgcgtgac
ctgattaagcatttcaccactttgcccgcgctgcgcgccgcggccgaagacgcgcgcgcg
ggcgatgcggatgcgctggcggagttcgcggcgatcgacggcgtgggccctatcgtcgtc
gcggcgctcggcgacttctttcatgaagcgcacaatatccaggcctggaacgacctgctc
gaccaggtcgccccgccccccttcatcgtgaccgcgcgcgactcggaagtgactgggatg
acattggtcttcaccggcagcctcgagtcgctgagtcgcgacgaagcgaaggcgcaggcc
gagttgctgggcgcgcgggtcgccggatcggtctccgcgaagaccgatctcgtgatcgcg
ggcccgggggccggctcgaagctcaaaaaggccgcggaactgcagattcgcgtcatttcg
gagcaggattggcgcgaaattgtccagaaatcgcagtga
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