Sphingomonas sp. NIBR02145: O3305_12555
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Entry
O3305_12555 CDS
T10953
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
spnb Sphingomonas sp. NIBR02145
Pathway
spnb01501
beta-Lactam resistance
spnb01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
spnb00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
O3305_12555
01503 Cationic antimicrobial peptide (CAMP) resistance
O3305_12555
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
spnb02000
]
O3305_12555
01504 Antimicrobial resistance genes [BR:
spnb01504
]
O3305_12555
Transporters [BR:
spnb02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
O3305_12555
Antimicrobial resistance genes [BR:
spnb01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
O3305_12555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
DUF418
DUF2140
Motif
Other DBs
NCBI-ProteinID:
WHU01044
LinkDB
All DBs
Position
2837988..2841188
Genome browser
AA seq
1066 aa
AA seq
DB search
MSRVFIDRPIFAWVIAIITMLMGLGAVFSLPIAQYPDIAPPQVNIRATYPGASAETVQNS
VTQIIEQNLTGIDGLLYFSSSSTSRGQVTISATFDKSTDPDIAQVQVQNQVQQALSRLPN
QVQQQGVRVTKSNPDTLLLVGVYDETDKRTNRDVSDWLSSNLQDTLSRLPGVGDVNVFGS
PYAMRIWLNPSALASYSLMPSDVVTAITNQNTEIAAGEIGGQPMPSSQMLNATVTAQSRL
QTPEQFAKIILKTQTNGAHVLLKDVARIELGAENYNAVSRVNGHPGSGIAISTAPGADAL
KTAELVKSTVAEAAKEFPEGFNYAYANDTTEFIKLSIHEVVMTLIEAIVLVVIVMFVFLQ
SWRATLVPMIAVPVVLLGTFAVFYALGYSINTLTLFGLVLVIGLLVDDAIVVVENVERLM
EEDPDLTPREATIKSMDQIQIALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIVSAMI
LSVLVALILSPALTATVLKRKKDMAEPGSGWLSRRVPFLGNAFRTGTEKFNQGFEWTIER
YTRTIGYVVDRKWIFLLIYLLVCAVLVLMFYRLPTGFLPTEDQGAASVQFRLPAGATQSR
TQQVQLAIEKYLREQEGKNVKTTFTVTGGGGGGGASGQNTGQGFVNFVPWDDRPGKDNAA
DAIVQRAAGAFRNFRDAQVFALVPPAIRGLGQSNGFTLELQNSSGMSREDFVAARDKLLA
AANADPDLQAVRLSDLPDVSTLNIQIDQEKLAALGLTQADVNNTLSTAWGGRYVNDFIDR
GRVKRVYVQGDAPYRADPQNLSEWFVRGSNGQMAPFSAFATIGWATAPTTVSRFQGISSF
EFQGQPAPGKSSGDAMNRMEQLASQIPGTSVAWAGLSYQERLAGGQAPLLYGVSLLIVFL
CLAALYESWSIPVAAMLVVPLGLIGAVFAVSLRGLQNDVYLQIGLLTTMGLAVKNAILMI
EFAERAEKEGKRVIEAALEAARIRFRPIVMTSLAFMFGVLPLAISTGAGANSRIAIGTAV
IGGMLTALVLAIFYIPLFFVLVRRGVRDSLKAVRGRIGRNKPEAQA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgtattcatcgatcgcccgatcttcgcctgggtgatcgcgatcatcaccatg
ctgatgggcctgggcgcggtcttctcgctgccgatcgcgcaatatccggacatcgcgccg
ccccaggtcaatatccgcgccacctatccgggcgcgtcggccgagacggtgcagaattcg
gtgacgcagatcatcgagcagaacctgaccggcatcgacgggctgctctatttcagctcg
tcctcgacctcgcgcgggcaggtgacgatcagcgcgaccttcgacaagagcaccgatccc
gacatcgcccaggtgcaggtgcagaaccaggtgcagcaggcgctgtcccgcctgcccaac
caggtgcagcagcagggcgtgcgcgtcaccaagtcgaaccccgacacgctgctgctcgtc
ggcgtctatgacgagaccgacaagcgcaccaatcgcgacgtttcggactggctctcgtcc
aacctgcaggacacgctttcgcgcctgccgggcgtgggcgacgtcaacgtgttcggctcg
ccctatgcgatgcggatctggctcaacccctcggcgctggccagctacagcctgatgccg
agcgacgtggtgaccgcgatcaccaaccagaataccgagatcgcggcgggcgagatcggc
ggccagccgatgccgagcagccagatgctcaacgcgacggtgaccgcgcaatcgcggctg
cagacgcccgagcagttcgccaagatcatcctcaagacccagaccaacggcgcgcatgtg
ctgctgaaggacgtggcgcggatcgagctgggcgcggagaactacaacgcggtcagccgg
gtgaacggccatcccggctcgggcatcgcgatcagcaccgcgccgggcgccgacgcgctc
aagaccgccgagctggtcaagtcgaccgtggcggaagcggcgaaggagttccccgagggc
ttcaactacgcctatgccaacgataccaccgagttcatcaagctctcgatccacgaagtg
gtgatgacgctgatcgaggcgatcgtcctggtcgtcatcgtgatgttcgtgttcctgcag
agctggcgcgcgacgctggtgccgatgatcgcggtgccggtggtgctgctcggcaccttc
gcggtgttctatgcgctcggctattcgatcaacacgctgaccctgttcgggctggtgctg
gtgatcggcctgctcgtcgacgacgcgatcgtcgtggtcgagaatgtcgagcgcctgatg
gaggaggatcccgacctcaccccgcgcgaggcgacgatcaagtcgatggaccagatccag
atcgcgctggtcgcgatcgccctggtgctgtcggcagtgttcctgccgatggcgttcttc
ggcggatcgaccggcgtgatctaccgccagttctcggtgacgatcgtctcggcgatgatc
ctgtcggtgctggtcgcgctgatcctgagcccggcgctgaccgccacggtgctcaagcgc
aagaaggacatggccgagccgggcagcggctggctgtcgcgccgcgtgccgttcctcggc
aacgcgttccgcacgggcaccgagaagttcaaccaaggcttcgagtggacgatcgagcgc
tacacgcggacgatcggctacgtcgtcgatcgcaagtggatcttcctgctgatctacctg
ctggtctgcgcggtgctggtgctgatgttctaccgcctgccgaccggcttcctgccgacc
gaggaccagggcgcggcgagcgtccagttccgcctgcccgcgggtgcgacgcagagccgc
acccagcaggtgcagctggcgatcgagaagtatctgcgcgagcaggagggcaagaacgtc
aagaccaccttcaccgtgaccggtggcggcggcggcggcggcgcgagcggccagaatacc
ggccagggcttcgtgaacttcgtcccctgggacgatcgcccgggcaaggacaatgcggcg
gacgcgatcgtccagcgcgcggcgggcgccttccgcaacttccgcgacgcgcaggtcttc
gcgctggtgccgccggcgatccgcgggctcggccagtcgaacggcttcacgctcgagctg
cagaacagcagcggcatgtcgcgcgaggacttcgtcgcggcgcgcgacaagctgcttgcc
gcggccaatgccgatccggacctgcaggcggtacgcctgtcggacctgcccgacgtgtcg
acgctcaacatccagatcgaccaggagaagctggcggcgctcgggctcacccaggccgac
gtcaacaacacgctgtcgaccgcctggggcgggcgctacgtcaacgacttcatcgaccgc
ggccgcgtgaagcgcgtctatgtccagggcgacgcgccctatcgcgccgatccgcagaac
ctgagcgagtggttcgtgcgcggcagcaacgggcagatggcgcccttctccgccttcgcg
accatcggctgggcgaccgcgccgaccaccgtctcgcgcttccagggcatctcgtccttc
gagttccagggccagccggcaccgggcaagagctcgggcgacgcgatgaaccggatggag
cagctcgcgtcgcagatcccggggaccagcgtcgcctgggccggcctctcctaccaggag
cggctggcgggcgggcaggcgccgctgctgtacggcgtgtcgctgctgatcgtgttcctg
tgcctggcggcgctctacgagagctggtcgatcccggtcgccgcgatgctcgtggtgccg
ctcggcctgatcggcgcggtgttcgcggtgagcctgcggggcctgcagaacgacgtgtac
ctgcagatcggcctgctcacgacgatgggcctggcggtgaagaacgcgatcctgatgatc
gagttcgccgagcgcgccgagaaggaaggcaagcgcgtgatcgaggcggcgctggaggcg
gcacgcatccgcttccgcccgatcgtcatgaccagcctggccttcatgttcggcgtgctg
ccgctggcgatatcgaccggtgccggcgccaacagccgcatcgcgatcggcaccgccgtg
atcggcggcatgctgaccgcgctggtgctggcgatcttctacatcccgctgttcttcgtg
ctcgtccgccgcggcgtgcgcgattcgctcaaggcggtgcgcggccggatcggccgcaac
aagccggaggcgcaggcatga
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