Streptococcus pneumoniae SPN994039 (serotype 3): SPN994039_10130
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Entry
SPN994039_10130 CDS
T02631
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spno
Streptococcus pneumoniae SPN994039 (serotype 3)
Pathway
spno03030
DNA replication
spno03410
Base excision repair
spno03420
Nucleotide excision repair
spno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPN994039_10130 (lig)
03410 Base excision repair
SPN994039_10130 (lig)
03420 Nucleotide excision repair
SPN994039_10130 (lig)
03430 Mismatch repair
SPN994039_10130 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spno03032
]
SPN994039_10130 (lig)
03400 DNA repair and recombination proteins [BR:
spno03400
]
SPN994039_10130 (lig)
Enzymes [BR:
spno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPN994039_10130 (lig)
DNA replication proteins [BR:
spno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPN994039_10130 (lig)
DNA repair and recombination proteins [BR:
spno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPN994039_10130 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPN994039_10130 (lig)
MMR (mismatch excision repair)
DNA ligase
SPN994039_10130 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPN994039_10130 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CCP34707
LinkDB
All DBs
Position
1017851..1019809
Genome browser
AA seq
652 aa
AA seq
DB search
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG
GKVLDGFEKYSHQYPLYSLQDAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYE
KGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDITVRGECYMPRASFDQVNQVRQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDKIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCNSDLLHFEDEVALRCINPRCPA
QIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLQEEDFLLLEGVKEKSAA
KLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQYFHSIENLYQADSEEVASIESLGG
VIAKSLQTYFATEGSEILLRELKETGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSE
AKSKLESLGAKVTGSVSKKTDLVVVGADAGSKLQKAQELGIQVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaatgaatgagttagtcgctttgctcaatcgctatgcgactgagtactat
accagcgataatccctcggtttcagacagtgagtatgaccgcctttaccgtgagttggtc
gagttagaaactgcttatccagagcaagtgctagcagatagtccgactcatcgtgttggt
ggcaaggttttagatggttttgaaaaatacagtcatcagtatcctctttatagtttgcag
gatgctttttcacgtgaggagctagatgcttttgatgcgcgtgttcgtaaggaagttgct
catccgacctatatttgtgagctgaaaatcgatggcttatctatctcgctgacttatgaa
aaggggattttggttgctggggtaacacgtggagatggttcaattggtgaaaatatcaca
gaaaacctcaagcgtgttaaggacatccctttgactttgccagaagaactagatatcaca
gttcgtggggaatgttacatgccacgcgcttcctttgaccaagttaaccaagtgcgccaa
gaaaatggagagcctgaatttgctaatcctcgtaatgcggcagcaggaactctgcgtcag
ttggatacagcagtagttgccaagcgtaatcttgcaacgtttctctatcaagaagccagc
ccttcaactcgtgatagccaagaaaagggtttgaagtacctagaacaactaggttttgtg
gtcaatcctaagcgaatcttggctgaaaacatagataaaatctggaattttatccaagaa
gtaggacaggaacgggaaaatctgccttacgatattgatggagtggtaatcaaggtcaac
gacctagcaagtcaagaagaacttggttttaccgttaaggctccaaagtgggcagtagcc
tacaagttccctgctgaagaaaaagaagctcaactcttatcagttgactggacagttggc
cgtaccggtgttgtaactccaactgctaatctaacaccagtacaacttgccggtacgact
gttagccgtgcgaccctgcacaatgtagattatattgctgaaaaagatatccgaaaagac
gatacggtcattgtatataaggctggtgacatcatccctgccgttttacgtgtggtagag
tccaaacgggtttctgaagaaaaactagatatccctacaaactgtccaagttgtaactct
gacttgttgcactttgaagatgaagtggccctacgttgtatcaatccgcgttgccctgct
caaatcatggaaggcttgattcactttgcttctcgtgatgctatgaatattacaggcctt
ggtccatctattgttgagaagctttttgctgctaatttagtcaaggatgtggcggatatt
tatcgtttgcaagaagaggatttcctccttttagagggggttaaggaaaagtccgctgct
aaactgtatcaggctatccaagcatcaaaggaaaattctgccgagaagctcttatttggt
ttgggaattcgtcatgtcggaagcaaggctagtcagcttttacttcaatatttccattca
attgaaaatctgtatcaggcagattcagaggaagtggctagtattgaaagtctaggtggc
gtgattgccaaaagtcttcagacttattttgcgacagaaggctctgaaattctgctcaga
gaattgaaagaaactggggtcaatctggactataaaggacagacggtagtagcggatgcg
gccttgtcaggtttgaccgtggtattgacaggaaaattggaacgactcaagcgctcagaa
gctaaaagtaaactcgaaagtctgggtgccaaagtgacaggtagtgtttctaaaaagacc
gacctcgtcgtggtaggtgcagacgctggaagtaaactgcaaaaagcacaagaacttggt
atccaggtcagagatgaggcatggctagaaagtttgtaa
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