Schizosaccharomyces pombe (fission yeast): 2541846
Help
Entry
2541846 CDS
T00076
Symbol
caf16, SPOM_SPAC20G4.01
Name
(RefSeq) CCR4-Not complex subunit Caf16
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2541846 (caf16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
2541846 (caf16)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
2541846 (caf16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
RsgA_GTPase
AAA_25
SMC_N
AAA_23
AAA_15
AAA_22
FtsK_SpoIIIE
SRP54
MMR_HSR1
ORC-CDC6-like
AAA_28
Zeta_toxin
AAA_27
Arf
AAA_16
Motif
Other DBs
NCBI-GeneID:
2541846
NCBI-ProteinID:
NP_001343004
PomBase:
SPAC20G4.01
SPAC20G4.01.1
LinkDB
All DBs
Position
I:join(4812099..4812222,4812302..4812421,4812467..4813065)
Genome browser
AA seq
280 aa
AA seq
DB search
MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGH
ISVGGKDPFRESSSAFVYLGTEWVNNPVIHRDMSVARLIASVGGDKFAERRDFLISILDI
DLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNA
TIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSALLETCLEWLKE
DKKNRGTREEEKRSTWDDVQESLKVGTDVFTDYFKISRAK
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaactgtttcaaacctctcttacacgttttctccaaagcagcctttaagtctt
gatcacgtaactttagatcttcctaaaggatcaaggactttacttgttggagccaatgga
gctggaaaatcaactttacttaaacttttatctggaaaatcgcttgcgaaagcaggacat
atatcggtgggtggtaaagatccttttcgtgagtctagttctgcatttgtttatttagga
actgaatgggttaacaaccctgttatacatagggatatgagtgttgcacgattaattgct
tctgttggaggagataaatttgccgaacgtagggatttcttgatttcaattcttgatata
gatcttcgttggcgaatgcatgcagtgtccgatggtgaaagacgacgtgttcaactatgt
atgggacttctgcgtccatttgaagtacttttacttgatgaagtaactgtagatttggat
gttcttgcccgggcagatttgttaaattttttgcaagaggaaacggaagtaaggaatgct
actattgtttatgcaacacatatatttgatggtttagctgagtggccaactcacttggtc
catctcagtcttgggcgtatcgtggattatggaccaatatccaagtttggtgctctgatg
acaaggtcctctacgggaaatagcgcccttctagagacatgtttggaatggctcaaagaa
gacaaaaaaaataggggaactcgagaagaggaaaagcgtagtacctgggacgacgttcaa
gaatcattaaaagttggaactgatgtatttactgattactttaagatttcccgagcaaaa
tag
DBGET
integrated database retrieval system
