Acidilutibacter cellobiosedens: EQM13_04125
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Entry
EQM13_04125 CDS
T05805
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spoa
Acidilutibacter cellobiosedens
Pathway
spoa03030
DNA replication
spoa03410
Base excision repair
spoa03420
Nucleotide excision repair
spoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EQM13_04125 (ligA)
03410 Base excision repair
EQM13_04125 (ligA)
03420 Nucleotide excision repair
EQM13_04125 (ligA)
03430 Mismatch repair
EQM13_04125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spoa03032
]
EQM13_04125 (ligA)
03400 DNA repair and recombination proteins [BR:
spoa03400
]
EQM13_04125 (ligA)
Enzymes [BR:
spoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EQM13_04125 (ligA)
DNA replication proteins [BR:
spoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EQM13_04125 (ligA)
DNA repair and recombination proteins [BR:
spoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EQM13_04125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EQM13_04125 (ligA)
MMR (mismatch excision repair)
DNA ligase
EQM13_04125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EQM13_04125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
5_3_exonuc
DNA_ligase_ZBD
Zn_ribbon_PaaD
DUF7501
Motif
Other DBs
NCBI-ProteinID:
QAT60824
UniProt:
A0A410QAC3
LinkDB
All DBs
Position
869566..871542
Genome browser
AA seq
658 aa
AA seq
DB search
MESIDRMRELIDIIDDLDYYYYTLDNPKVSDKEYDEYYSQLIKLEKETGITLPSSPTQRV
GGEILEKFEKHVHLGKLWSLDKSRSTGELINWDERIRRIINDYNEKNNEKLPPLEYVTEY
KFDGLTINLTYNNGELVQGATRGNGSVGEAILPQLKTIKSIPLKIPFKGLVEIQGEGLMP
LSALEEYNKTALEPLKNARNAAAGALRNLDPNETRKRKLIGYFYNVGYIEGKTFHDYVEM
IDFLKENRLPVSNYLKVFTSIDQVIEEIERVKSERERLDILTDGVVIKINDTKTKDILGY
TLKFPRWAIAYKYEAEETTTKLLEVKWNVGRTGKVTPTAILEPVEIGGVTVKRATLNNWD
DIQRKKVKIGSKVLIRRSNDVIPEIMGVMEPNEEEITIEKPVKCPYCGSELIQMGVHMFC
PNSLTCKPQLVSRIVHFSGRDGMNIEGFNDKTAEKLFEVLNLKDIPQIYELKYEDLIKLD
GFKDKRVNNLLQSIKSSKKANLSSFIFALGIPNVGKRTASDLANHFKSLDGVMNASYEEL
ISIPDIGDIVAKSIIEFFHDEKIRQGIEKLLREGIVLSFEERKEKESIFNGKTVVITGAL
KKYTRREAQDMVESLGGKVSSSVSKKTDYVIAGENPGSKYEKAVELGIKILNEEELYK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcatagatagaatgagagaattaatagatataatagatgatttggattattat
tattatactttggataatcctaaagtaagcgataaggaatatgacgaatattatagtcaa
ttgataaaactcgagaaggaaacgggaattacacttccatcatcacctactcaaagagta
ggcggagaaatacttgaaaaatttgaaaagcatgttcatcttggaaaactgtggagtttg
gacaaaagccgcagtacaggggaactgataaattgggatgaaaggattagaaggataatc
aacgactacaatgaaaaaaataacgaaaaattgcctcccttagaatatgttacagaatat
aaatttgacggacttacaattaaccttacttataacaacggagaattggttcaaggggct
acaaggggaaacggctctgtaggagaggccatacttcctcaattgaaaactataaaatcg
attccactgaaaattcccttcaaaggactggtcgaaattcaaggggaagggcttatgcct
ttatctgctttagaggaatataacaagacagccttagaacccttgaaaaatgcgagaaat
gctgcggcaggagcattaagaaacttagatcccaatgaaacgaggaagagaaagctaata
ggttatttttacaatgtaggatatattgaagggaaaacattccatgactatgtggaaatg
attgattttttaaaggaaaacaggcttcccgtaagtaattatttgaaggtatttacaagt
atagatcaggttattgaagaaatagaaagagtgaaaagcgaaagggaaagattagatatt
cttacggatggagttgtaataaaaattaatgatacaaagacaaaggatatcttgggatat
actttaaaatttcccagatgggcaattgcatataagtatgaagcggaagagactacgact
aaattgctggaggtcaaatggaatgtcggaagaacggggaaggtaacccctacggcaata
ttggaacctgttgaaatcggcggagtgacggttaagagagctacgcttaataattgggat
gatattcagagaaaaaaggttaaaataggttcgaaagtacttataaggagatccaatgat
gtaattcccgaaataatgggagtcatggagcctaacgaggaagagataacaattgaaaaa
cctgttaaatgcccttactgtggaagtgagttgattcaaatgggggttcatatgttttgc
cctaattcattgacctgtaagcctcaacttgtttccagaatagtccatttttccggaaga
gacggtatgaatattgagggctttaatgataaaactgcggaaaagctctttgaagtattg
aacctaaaagatatccctcagatatacgaattgaaatatgaggatttaataaaactggac
ggatttaaagacaaaagggtaaacaaccttcttcagtcaataaaaagcagtaaaaaagca
aacttaagttcatttatttttgctttgggaattcctaatgtgggaaaaagaacggcaagc
gatttggcaaatcattttaaatccttagacggagtgatgaatgcatcctatgaagaatta
atatccatacctgatataggagatatagtggccaaaagcataatagaatttttccatgat
gaaaaaatccgtcagggaatcgaaaaattattaagagaagggatagttctttcatttgag
gaaaggaaggaaaaagagtctatattcaatgggaaaactgtggtaataaccggagctttg
aaaaaatacacgcgaagagaggcacaagatatggttgaaagcctagggggtaaggtatca
agcagtgtaagcaaaaagacggattatgtaatagcgggagaaaatccgggttctaaatat
gagaaggcagttgaactgggaataaaaatattgaatgaagaggaattatataaatga
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