Streptococcus porcinus: NCTC10925_01166
Help
Entry
NCTC10925_01166 CDS
T07290
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spoc
Streptococcus porcinus
Pathway
spoc03030
DNA replication
spoc03410
Base excision repair
spoc03420
Nucleotide excision repair
spoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10925_01166 (ligA)
03410 Base excision repair
NCTC10925_01166 (ligA)
03420 Nucleotide excision repair
NCTC10925_01166 (ligA)
03430 Mismatch repair
NCTC10925_01166 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spoc03032
]
NCTC10925_01166 (ligA)
03400 DNA repair and recombination proteins [BR:
spoc03400
]
NCTC10925_01166 (ligA)
Enzymes [BR:
spoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10925_01166 (ligA)
DNA replication proteins [BR:
spoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10925_01166 (ligA)
DNA repair and recombination proteins [BR:
spoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10925_01166 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10925_01166 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10925_01166 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10925_01166 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RTT107_BRCT_5
Flavodoxin_4
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
VTT45911
LinkDB
All DBs
Position
1:complement(1179719..1181677)
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQKDSPTQGVG
GLILSGFEKYQHPYPLYSLQDAFSQEELVAFDRRIKLEFPIVTYVAELKIDGLSISLNYK
GGKLVTGATRGDGSVGENITENIKKIKDIPQILKEPIDITVRGEAYMSKHSFQMINVERQ
ENGETEFANPRNAAAGTLRQLDTSIVGKRNLASFLYQEASPSQESTQVAVLDKLSYLGFS
VNNHRMVSSSMEDIWQFIQEIEADRAQLPYDIDGIVIKVADLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTIGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAQKDIRIG
DTVIVYKAGDIIPAVLRVVTDKRKDQEPILIPNLCPSCQSSLTHLEDEVALRCINPLCPS
LIQRSLEHFASRNAMNIAGLGPAVVEKLFTAQLIHDVADIYRLSREQLLSLEGIKEKSAD
KLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLETFGDIETVMQSDEEAIAQIDGLGH
VIANSIAQYFAKPEAQQLISELKSQGLNLSYLGQRVDQSAPLYGLTVVLTGKLEEMGRSE
AKTKLENLGAKVTSSVSKKTDVVLAGSDSGSKLDKAKQLGIRIEDEQWLLDL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagaattattgagttaacaaatctcttgaatcagtatcgacaagaatattat
acaaatgataatcctactgtcagtgatcaagaatatgataaactttatcatgaattgtta
gcattagaaacagaatatcccgaatttattcaaaaagatagcccgacacaaggagttggt
gggcttattttatctggctttgaaaaatatcaacatccgtatccgctgtatagtttacag
gatgctttttcgcaagaagagttagttgcatttgatcggcgaattaaattagaatttcca
atagtaacatatgtggccgaacttaagattgatggcttgtctatttccttaaattataaa
ggcggaaaattagtaacaggtgccacacgaggggatggctctgttggggaaaatatcact
gaaaatattaaaaaaattaaagacattccacaaattttaaaagagcccattgatatcacg
gttcggggtgaggcgtatatgtccaaacactcttttcagatgattaatgtcgaaagacaa
gaaaatggggaaacagagtttgctaatcctagaaatgcagcagcaggaactcttcgccag
ttagatacctcaattgtgggcaaaagaaatttagcaagttttctctatcaggaagctagt
cctagtcaggaaagtacccaagtagccgtattagacaaattgtcttacttggggttttct
gtcaataaccaccgtatggtatcatcttccatggaagacatttggcaatttatccaagaa
attgaggcagatcgtgctcaattgccttatgacattgacggtatagtgattaaggtggct
gaccttgcaatgcaagaagagttaggttttactgtaaaagccccacgttgggcaattgcg
tataaatttccagctgaagaaaaagaagctgagatcttatctgtggattggacgataggc
cgaactggggttgtaacacctaccgctaatttaacaccagttcagcttgcaggaaccaca
gtaagtcgcgctacactacataatgttgactatattgctcaaaaagatattcgtattggt
gatactgttattgtttataaagctggtgatatcattccggcggttttgcgtgttgtaaca
gataaaagaaaagatcaagaaccaatattgattcctaatctctgtccatcttgtcagagt
tccttaactcacttggaagatgaagtagccctacgttgtataaatccattgtgtcctagc
ttgatacaaagaagtttggaacattttgctagtcgaaacgctatgaacattgcaggtttg
ggacctgcagtagtagaaaaactatttactgctcaattaattcatgacgttgctgatatt
tatagactcagtcgtgagcagttattgtctctagaaggtattaaggaaaaatcagctgat
aaattattgtctgctattgccgattctaaagaaaaatcagctgaaaaacttctttttggt
ttgggaattagacatgttggcgaaaaagcaagtcgtttattgttagaaacatttggtgat
attgaaaccgtaatgcaatctgatgaagaagctattgcccagatagatggcttgggtcat
gttattgctaattctatagctcaatattttgctaaaccagaagctcagcaattgatatct
gagttgaaatctcaaggtctcaacctaagttatttgggccaaagagtagatcaatctgca
ccactttatggtcttacagttgttctaactggaaagttagaggagatgggacgtagcgaa
gcgaagactaaacttgaaaatcttggcgctaaagtaacatctagtgtctctaaaaaaaca
gatgtggttcttgctggaagtgactctggctctaagttagataaagcaaaacagttaggt
attaggattgaagatgaacaatggttattggacttatag
DBGET
integrated database retrieval system
