Sporosarcina sp. ANT_H38: GGGNBK_20825
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Entry
GGGNBK_20825 CDS
T10925
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spoh Sporosarcina sp. ANT_H38
Pathway
spoh03030
DNA replication
spoh03410
Base excision repair
spoh03420
Nucleotide excision repair
spoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GGGNBK_20825 (ligA)
03410 Base excision repair
GGGNBK_20825 (ligA)
03420 Nucleotide excision repair
GGGNBK_20825 (ligA)
03430 Mismatch repair
GGGNBK_20825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spoh03032
]
GGGNBK_20825 (ligA)
03400 DNA repair and recombination proteins [BR:
spoh03400
]
GGGNBK_20825 (ligA)
Enzymes [BR:
spoh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GGGNBK_20825 (ligA)
DNA replication proteins [BR:
spoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GGGNBK_20825 (ligA)
DNA repair and recombination proteins [BR:
spoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GGGNBK_20825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GGGNBK_20825 (ligA)
MMR (mismatch excision repair)
DNA ligase
GGGNBK_20825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GGGNBK_20825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
DUF5689
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XKI14052
LinkDB
All DBs
Position
complement(4233884..4235923)
Genome browser
AA seq
679 aa
AA seq
DB search
MMAEGEKKSMDRLELEKRVEELNNLLHEYGHAYYVLDKPLTSDAIYDQYMQELLSIEAGN
PDLIYPDSPSQRVGGETLKGFGKVVHEFPMLSLSNAFNEEDLREFDRRVKTAAGHDVSYI
CELKIDGLAISLRYIDGKFVQGSTRGDGTVGEDITASLKTIRTIPLRLKETASIEVRGEA
YMPKKSFMTLNAIRDEAGDEPFANPRNAAAGSLRQLDPKIAASRNLAIFVYGIGGDGSAY
GQDSHSDSLDHLAALGFETNKERKRCETIEEVIDYVGIWGESRSALDYEIDGIVVKVDNF
EDQEQLGFTAKSPKWATAYKFPAEEVVTTLLDIELSVGRTGVVTPTAILEPVLVAGSTVG
RASLHNEDLIKEKDVRIGDTVIIRKAGDIIPEVVSAIVEKRTGDEVPFEMPENCPVCDSE
LVRIEGEVAIRCVNPQCPAQMKEAIIHFVSRNAMNIEGIGERVVDLLYKADLVHDVSDLY
TLTREQLIELERMGEKSVSKLLTAIEASKENSLEKMLFGLGIRHVGEKAAAILAEEFGTL
ADLTAADAERLITIHEIGDKVADSITTYFSNEKVLEVLRKLESYGLNTAYKGRRRQDAPT
DGLFSGKTVVLTGKLSILTRGEAKEKIEAFGGKVSGSVSKKTDLVIAGEDAGSKLAKAEE
LEITVWNETELIEALGEKE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgaaggagagaaaaaatcgatggatcgacttgaactcgaaaaacgggtggaa
gaattgaataacctacttcatgagtatggtcatgcttattatgtacttgataaaccgctc
acttctgatgcaatctatgaccaatatatgcaggaattattgtctattgaagcgggaaat
cccgacctcatttatccagattcgccctcccagcgtgtaggaggagagacattgaaggga
ttcgggaaagtcgttcacgagttcccgatgctaagcctatccaatgcgtttaatgaggaa
gatttaagagaatttgacagacgagttaagacggcagcaggtcacgatgtttcgtatatt
tgtgaactcaaaatagatggacttgcgatttcgcttagatatatcgacggaaagtttgtg
caaggctctacgcgcggagatggtacggtcggggaagatatcacggctagtttaaaaaca
atccggacaataccactcagactgaaagaaactgcttctattgaagtacgcggtgaagcc
tatatgcctaagaagtcgtttatgacattgaatgcaatacgtgacgaggctggcgatgag
ccgttcgccaatccacgtaacgcagcggcgggctcacttcgtcagctcgatccgaaaata
gctgcgagccgaaacttagcgatattcgtttatgggatcggtggcgatggcagtgcatat
ggacaagatagccattcagattcactggatcacctcgctgcacttggatttgaaacgaac
aaggaacgcaagagatgtgaaacgattgaagaagtgattgactatgttgggatatggggg
gaaagccgatctgctcttgattatgaaatcgatgggattgtcgtaaaagtcgataacttc
gaagatcaggaacagcttggatttacagcgaaaagtcctaaatgggcgactgcttataag
tttcctgctgaggaagtcgtcacaacattactggatatagaactcagtgttggtagaaca
ggtgtagttaccccaacagcgatactcgaaccagtactagttgcagggtcgacagtcggt
cgtgcatctctgcataacgaagatctcattaaagagaaggacgttcgaataggtgacaca
gttattatccgaaaagcaggagatattattccggaggtagtctctgcaattgtggaaaaa
cgtactggcgatgaagtgccttttgaaatgcctgagaactgtcctgtatgtgattcggaa
ctcgtccgaatcgaaggggaagtggcgattcgttgtgttaatccgcaatgtccagctcag
atgaaagaagcaatcattcacttcgtatcccgcaatgcgatgaatatcgaaggaattggt
gaacgggtagtagacctattgtacaaggcggatcttgtccatgacgtctcggatctatat
acgctgacaagagagcaattgattgaactcgaacgcatgggagaaaaatctgtctcgaaa
ctactaactgcaatcgaagcatctaaagaaaattcgcttgaaaaaatgctctttggactt
ggcatccgtcatgtaggcgaaaaagcggcagcgatacttgcagaggagttcgggacactt
gctgatttaacggcagccgatgcagagcggcttataaccatccacgagatcggggataag
gtagccgattcaattacgacctattttagcaatgaaaaagttcttgaagtattacgaaag
ctggagtcttacggattgaatacagcctataaaggacgcaggcggcaagacgccccaaca
gacggattgttttctgggaaaactgtcgtcctgacaggaaaactatccattttaacccga
ggcgaagcaaaagagaaaatagaagcattcggtggaaaagtgagcggtagtgtgagtaaa
aagacagatcttgtgatcgcaggggaagatgccggctcgaaattggcgaaagccgaggaa
cttgaaatcactgtgtggaatgaaacagagttgattgaagcacttggcgaaaaggagtaa
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