Sporanaerobacter sp. UW_FK_SPOR1_1: ACFWUA_02225
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Entry
ACFWUA_02225 CDS
T11243
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spok Sporanaerobacter sp. UW_FK_SPOR1_1
Pathway
spok03030
DNA replication
spok03410
Base excision repair
spok03420
Nucleotide excision repair
spok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACFWUA_02225 (ligA)
03410 Base excision repair
ACFWUA_02225 (ligA)
03420 Nucleotide excision repair
ACFWUA_02225 (ligA)
03430 Mismatch repair
ACFWUA_02225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spok03032
]
ACFWUA_02225 (ligA)
03400 DNA repair and recombination proteins [BR:
spok03400
]
ACFWUA_02225 (ligA)
Enzymes [BR:
spok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACFWUA_02225 (ligA)
DNA replication proteins [BR:
spok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACFWUA_02225 (ligA)
DNA repair and recombination proteins [BR:
spok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACFWUA_02225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACFWUA_02225 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACFWUA_02225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACFWUA_02225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XOQ17324
LinkDB
All DBs
Position
complement(457150..459135)
Genome browser
AA seq
661 aa
AA seq
DB search
MDNIERMKELIDIIEDLNYHYYTLDNPKVSDGEYDKIYYELVELEKQTGVVLPYSPTQRV
GGEILERFQKHVHLAKLWSLDKSQSIGELKNWDKKVRRLIDEYNTTHDDKLPEPTYVVEY
KFDGLTINLTYKNGELVEGATRGNGEVGEAILSQIKTIKSIPLKINFKGTIEIQGEGLMP
LSALEKYNKTHDEPLKNARNAAAGALRNLDPKVTKERNLIGYFYNVGYIEGKKFETHVEM
LEFLRENRLPVNEYLKLYETIDEVVEEIERVDIERKKLDVLTDGIVIKINDMRTREILGY
TQKFPRWAIAYKFEAEETTTKLLEVEWNVGRTGKVTPTAILSPVEIGGVTVKRATLNNWD
DIQRKKLKINSNVLIRRSNDVIPEIMGTMDTEEETKEIEKPKYCPACGSELVQDGVHIFC
PNSLTCKPQLVSRMVHFASRDAMNIEGFNEKTAEKLFEELDLTDIPQIYELKYEDLINLE
GFKEKKTKNLLSAIEKSKECTLDSFIYALGIPNVGKKTARDLANHFKSLDKILDAKYEEL
ITIPDVGDVIANSIIEFFHDSKILDGIDKLLYEGVNPKHEESETLQNTFFSGKTVVLTGT
IDGISRNELKEIIEKMGGKVSGSVSKKTDYVIVGEDPGSKYEKALSLGIEIIDENRLKTI
I
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtggataatatagagagaatgaaagaacttatagatattatagaagatttgaattatcat
tattatacattagacaatccaaaagtaagcgatggagaatatgacaagatttattatgag
ctggtagagttagaaaaacaaacgggagtagtattaccttattcacctacgcaaagagta
ggtggagaaattcttgaaagattccaaaagcatgttcatttggcaaagctatggagttta
gataaaagccaaagtataggagaactaaagaattgggacaaaaaagtgagaagattgata
gatgaatacaataccactcatgatgacaaattgcctgagcctacttatgtagtagaatac
aaatttgatgggctaactataaatcttacctataaaaatggagaacttgtagaaggagct
actagaggaaatggagaagttggagaggctatactttctcaaataaagaccataaaatcc
attccccttaaaataaattttaagggaactattgaaattcaaggggaaggccttatgcca
ctatctgctttggaaaaatacaacaaaactcatgatgagcctctaaaaaatgcacgaaat
gctgctgcaggagctcttagaaatttagatccaaaagttacaaaggaaagaaatcttata
ggatatttttataatgtaggatatatagaaggtaaaaagtttgaaacccatgtagaaatg
ttggaatttttaagagaaaataggctgccagtaaatgaatatttaaaactttatgaaaca
attgatgaagtagtggaagaaatagaaagagtagacattgaaagaaaaaaacttgacgta
ttgacagatggaatagttatcaaaataaatgatatgagaactagggaaattctggggtat
actcagaaatttccccgttgggctatagcctataaatttgaggcagaagagacaactaca
aagctattagaagttgagtggaatgtaggaagaacagggaaagtaactccaacagctatt
ttatctcctgtggaaattggaggagtcacagtcaaaagggcaactttaaacaactgggat
gatatacaaagaaaaaaattaaagataaattccaatgtattaatcaggcgttctaatgat
gtcataccagaaataatgggtaccatggatacagaggaagaaacaaaagaaatagagaaa
cctaaatattgtcctgcctgtggtagtgaacttgttcaagatggagttcatatattttgt
ccaaattcactgacttgcaaacctcaactcgtatcaaggatggtacattttgccagtaga
gatgctatgaatattgaaggattcaatgaaaagacagcggaaaaactatttgaggagctt
gatttgactgatatacctcaaatctatgaattgaaatatgaagatctcataaatttggaa
ggtttcaaagaaaaaaagactaaaaatttgctttcggctattgaaaagagcaaggaatgt
acactggattcttttatatatgcgttgggcataccaaatgttgggaaaaagaccgcgaga
gatttggccaatcattttaagtctttagataaaattcttgatgctaaatacgaagaactt
ataactattccagatgtgggagatgtcatagcaaatagtatcatagagttcttccacgat
tctaaaatactagatggcattgacaaacttttatatgaaggtgtcaatcctaaacatgaa
gaaagtgaaacccttcaaaatactttctttagtggcaaaactgtggttttgacaggaact
atagatggaatctctagaaatgagttgaaagagattatagaaaaaatgggtgggaaagta
tcaggtagtgttagcaagaaaactgactatgtcatagtaggggaagacccaggttctaaa
tatgaaaaagcattgagtttaggaattgaaataatagatgaaaataggctaaaaaccatt
atttga
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