Flagellimonas maritima: HME9304_03417
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Entry
HME9304_03417 CDS
T05505
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spon
Flagellimonas maritima
Pathway
spon03030
DNA replication
spon03410
Base excision repair
spon03420
Nucleotide excision repair
spon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HME9304_03417 (ligA)
03410 Base excision repair
HME9304_03417 (ligA)
03420 Nucleotide excision repair
HME9304_03417 (ligA)
03430 Mismatch repair
HME9304_03417 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spon03032
]
HME9304_03417 (ligA)
03400 DNA repair and recombination proteins [BR:
spon03400
]
HME9304_03417 (ligA)
Enzymes [BR:
spon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HME9304_03417 (ligA)
DNA replication proteins [BR:
spon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HME9304_03417 (ligA)
DNA repair and recombination proteins [BR:
spon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HME9304_03417 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HME9304_03417 (ligA)
MMR (mismatch excision repair)
DNA ligase
HME9304_03417 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HME9304_03417 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
DUF72
5_3_exonuc
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
AWX46384
UniProt:
A0A2Z4LXW9
LinkDB
All DBs
Position
complement(3765286..3767286)
Genome browser
AA seq
666 aa
AA seq
DB search
MNTQQKIESLRKELREHNYNYYVLDQPIISDFDFDLKLKELQELEQAYPEFYDATSPTLR
VGGMVTKNFETVRHEHRMYSLDNSYSKEDLEDWEKRIQRILGDVEVAFTCELKYDGASIS
LTYEEGNLVRAVTRGDGFQGDDVTTNIKTIKSIPLQLKGDYPPKFDIRGEIILTLEGFAK
MNQERLANGEEAYMNPRNTASGSLKLQDSALVAQRPLECLLYSIAGRILNISSQFEVLEK
ARAWGFKVPSVAKLCKTTDEVMQFVDYWDTHRHDLPYETDGVVIKVNSLRHQEELGYTAK
APRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLTPVLLAGTTVKRASLHNADQMA
KLDIRVGDTVFVEKGGEIIPKIIAVDFTKRPSDSVPTSYIQNCPECRTELIRKEGEAQHF
CPNDTGCPPQITGRIQHFISRKAMDIEGLGGETVELLFKEDLIASYADLYVLTKEQLMPL
ERMAEKSAENLVNGVAASKNIPFERVLFGLGIRYVGETVAKKLAKAYKNIDSLMAATIEE
LIAVDEIGERIAESVVQFFVEPENVEIIQRLKSYGLQFSLSEEQLENQSEKLKGQTFVVS
GVFETIGRTELKKIIEDNGGKVASSISSKTSFLVAGDNMGPSKKSKAENLGVPIITEQEF
LEKLNG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaatacccaacagaaaatagaatccttaagaaaagaacttcgagaacacaattacaac
tattatgttttggatcaacctatcatttccgattttgattttgatctaaagttgaaggaa
ctccaagaattggaacaggcctatcctgaattttatgatgccacttccccaacattgcgg
gttggtggaatggttaccaaaaattttgagaccgttaggcatgaacatcgcatgtattca
ttggataactcgtattccaaggaagatttggaggattgggagaaacgaattcaacgcatt
ttaggggacgtagaagtagcgttcacttgcgaattgaaatacgatggtgcgtccattagt
ttgacctatgaagaaggaaatttggtaagggcggtcacccgaggtgatggttttcaaggg
gacgatgttactacgaacatcaaaaccataaaatcgattccgcttcaattaaaaggggat
tatccaccaaaatttgatataaggggcgagattatcttaacgctggaaggttttgccaaa
atgaatcaagagcgattggccaatggcgaagaggcttacatgaatcctagaaatacggct
tcgggcagtttaaaattacaggatagcgctctagttgcacaacggccgttggaatgtttg
ctctatagtatcgcaggtagaatattgaatatttcttcccagtttgaagttttggaaaag
gcacgcgcatggggctttaaagtcccatcggtggcaaagctttgcaaaaccactgatgaa
gtcatgcagtttgtcgactactgggatacacatcggcatgacctgccttatgaaactgat
ggtgtggttattaaagtaaatagcttgcgacatcaagaggaattgggttataccgccaag
gctccacgctgggcaatggcctacaaatttaaggcagaacaggtttcaaccgtgttaaat
gaaattacctatcaagtgggcagaacgggagcgattacacctgttgcaaacttaacaccg
gtgttattggcaggtaccacggtaaaaagggcttcgttgcacaatgctgaccaaatggca
aaactggacataagggtaggggataccgtttttgtggagaaaggaggtgagattattcca
aagataattgcagttgattttacaaaacgtccttcagattcagtaccgaccagctacatt
caaaattgtcccgaatgtagaacagaactgattcgaaaagagggtgaggcacaacatttt
tgtccaaatgatacaggttgtccccctcagataacaggtcgcatccaacattttatttct
agaaaagctatggatattgaaggtttgggaggggaaaccgtggaattgctttttaaagag
gatttaatagccagttatgcagatttatatgtcttgaccaaagaacagctaatgccattg
gaacgcatggcagaaaaatccgctgaaaatctggtgaatggtgttgcagcttccaagaac
attccatttgaacgggttttgttcggtttgggcatacgttacgtaggagaaaccgtggca
aaaaaactggcaaaggcttataagaatattgattccttaatggctgccactattgaagaa
ttaatagcggtggatgaaattggtgaacgtatagcagagagtgtggtccaattttttgtt
gaacctgaaaacgtggaaatcatccaaagacttaaatcttatggattgcaattctccttg
tccgaagaacagttggaaaatcaatccgaaaaactaaaaggacaaacttttgtggtatcc
ggtgtttttgaaacaatcggtagaaccgaactaaaaaaaattattgaggataatgggggc
aaagtggcttcttccatttcatccaaaacctcgtttttggtggccggcgacaacatgggg
ccaagcaaaaaatccaaagccgagaatttgggagtgccgattattacagagcaggaattt
ttggaaaaattgaatggatga
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