Sporosarcina sp. P37: SporoP37_06440
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Entry
SporoP37_06440 CDS
T04826
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spop
Sporosarcina sp. P37
Pathway
spop03030
DNA replication
spop03410
Base excision repair
spop03420
Nucleotide excision repair
spop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SporoP37_06440 (ligA)
03410 Base excision repair
SporoP37_06440 (ligA)
03420 Nucleotide excision repair
SporoP37_06440 (ligA)
03430 Mismatch repair
SporoP37_06440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spop03032
]
SporoP37_06440 (ligA)
03400 DNA repair and recombination proteins [BR:
spop03400
]
SporoP37_06440 (ligA)
Enzymes [BR:
spop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SporoP37_06440 (ligA)
DNA replication proteins [BR:
spop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SporoP37_06440 (ligA)
DNA repair and recombination proteins [BR:
spop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SporoP37_06440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SporoP37_06440 (ligA)
MMR (mismatch excision repair)
DNA ligase
SporoP37_06440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SporoP37_06440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
DUF6120
Motif
Other DBs
NCBI-ProteinID:
ARK24342
LinkDB
All DBs
Position
complement(1224073..1226100)
Genome browser
AA seq
675 aa
AA seq
DB search
MDDVLELEKRVAELHKILREYGHAYYDLDAPIVPDSEYDEKMQELLAIEEAHPDLIYPDS
PTQRVGGAPLEVFSKVVHRHPMLSLANAFNEEDLRDFDRRVKEAAGSAVYVCELKIDGLA
VSLQYEEGRLVQGATRGDGAVGEDITANLKTIRTVPLKLNEPLTIEVRGEAYMPKQSFVT
LNEDRDEAGEVPFANPRNAAAGSLRQLDSQVAASRNLAVFIYAVGGDAEVYGLDSHSEAL
NKVDELGLTTNKERKRCATIEEVLEYVEYWTKNRQSLDYEIDGIVIKVDNFESQEQLGYT
AKSPKWAIAYKFPAEEVQTKLLDIELSVGRTGVVTPTAILEPVRVAGTTVGRASLHNEDL
IREKDIRIGDHVVLRKAGDIIPEVVMPLIEQRTGEEEPFHMPEACPECDSELVRIEGEVA
LRCVNPKCPAQMKEALIHFVSRRAMNIDGVGEKLVEQLYEADLVQDVSDLYTLTKEELLG
LERIGEKSATNILAAIDTSKENSLEKLLFGLGIRHVGEKVARILAEEYRTLEALEQATDE
DLVNIFEIGAIVADAVTTYFSTEEVQDVMNKLRSYGVNTVYKGAAREELPTTGPFAGKTI
VLTGKLTALTRGEAKEQIESLGGTVSGSVSKKTDLVIAGEDAGSKLTKAKELEIEIWDEQ
AMLEALGVDTNEKND
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgttctggaactggagaagcgagtggcagaactccataaaattctgcgtgaa
tacggacatgcctactatgatttggatgccccgatcgttcccgattcagaatatgatgaa
aaaatgcaggagcttctggctatagaagaagcacatcctgatctaatatatcctgactct
ccgacacagcgcgtgggcggggcgccgcttgaggtatttagtaaagtcgttcatcgtcac
cctatgcttagcctggcgaatgcatttaacgaagaagatttgcgggactttgacagacgg
gtgaaagaagcagctggcagcgcggtatatgtatgtgaattaaaaatcgacggacttgcc
gtttctttgcagtacgaagaaggccggctagtgcagggggccacacgtggggacggtgca
gttggtgaagatattactgcgaacttgaaaaccattcgaacggtgccgctgaaactgaac
gaaccgctgacaattgaagtgcgcggagaagcttatatgccgaaacagtcatttgttacg
ctcaacgaagaccgggatgaagcgggtgaagtgccgttcgcgaaccctcggaacgcggcc
gcgggttcactccggcagctcgattcccaagttgctgcgagccgcaatcttgccgtgttc
atttatgctgttggcggagatgcggaagtatatgggctggacagtcattctgaagcactc
aacaaagtggatgaactgggtctgacgacaaataaagagcgcaagcgctgtgcaaccatt
gaagaagtgctggagtacgtggaatactggacaaaaaacagacagtccctcgattatgaa
atcgatgggatcgtcattaaagtagataatttcgagtcacaggaacagctcggctataca
gcgaaaagccctaagtgggcgattgcctataagttcccggcagaggaagtgcagactaaa
ctgcttgatatcgagttaagtgtagggcgaacaggagtcgtcacaccgactgcgattctt
gagccggtgcgcgttgcgggtacgacagttggacgggcatctttgcataatgaggattta
atacgggaaaaggatatacgaatcggcgatcatgtcgtactgcgaaaagcgggtgacatt
attcctgaagttgtgatgccgctgatagagcagcggacgggtgaagaagaacctttccat
atgccggaagcttgtcctgaatgcgattcggagctcgtacggatcgagggagaagtggca
ttgcgttgtgtgaatcccaaatgtcctgctcaaatgaaggaagcgctgattcactttgtt
tccagaagagcgatgaatattgacggagtcggcgaaaaacttgtcgaacaattgtatgaa
gctgatcttgtacaagatgtatctgatctgtatacattgactaaagaagaactgctgggg
ctggaacgaattggcgagaaatccgcaaccaatattttagccgctattgatacatccaaa
gagaattcactggaaaaactcctgttcggactgggaatccgtcatgtgggcgaaaaagtt
gcaagaatccttgcagaagaatatcggacacttgaagcactggaacaagcaaccgatgaa
gatcttgtaaacatttttgaaatcggtgcaatcgtagcagatgcggtcacgacctatttc
agcacggaagaagtgcaggacgtcatgaacaaactccgctcatacggggtgaatactgtc
tataaaggtgctgcccgggaggagttaccgactactgggccgtttgcaggcaagacaatt
gtactgacagggaagctcactgcgttaactcgcggagaagcgaaagaacagatagaatcg
cttggcggaacagtcagcggcagtgtcagcaagaaaacagatctggttattgccggtgag
gatgcaggctcgaagctgacgaaagccaaagaattagagattgaaatttgggatgaacaa
gccatgcttgaagcccttggagtggatacgaatgagaagaacgactaa
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integrated database retrieval system
