Sulfitobacter pontiacus: G6548_09395
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Entry
G6548_09395 CDS
T06732
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spot
Sulfitobacter pontiacus
Pathway
spot03030
DNA replication
spot03410
Base excision repair
spot03420
Nucleotide excision repair
spot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G6548_09395 (ligA)
03410 Base excision repair
G6548_09395 (ligA)
03420 Nucleotide excision repair
G6548_09395 (ligA)
03430 Mismatch repair
G6548_09395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spot03032
]
G6548_09395 (ligA)
03400 DNA repair and recombination proteins [BR:
spot03400
]
G6548_09395 (ligA)
Enzymes [BR:
spot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G6548_09395 (ligA)
DNA replication proteins [BR:
spot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G6548_09395 (ligA)
DNA repair and recombination proteins [BR:
spot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G6548_09395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G6548_09395 (ligA)
MMR (mismatch excision repair)
DNA ligase
G6548_09395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G6548_09395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
NPCBM
Motif
Other DBs
NCBI-ProteinID:
QLL42731
LinkDB
All DBs
Position
1941974..1944094
Genome browser
AA seq
706 aa
AA seq
DB search
MTDKTALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERF
PGLKRADSPSDKVGAAPAEGFGKVRHDVAMLSLGNAFEDEDVVDFDARIRKYLGLPGGTP
LAFTAEPKIDGLSLSLRYENGDLVQAATRGDGAVGENVTANARTIDTIPTRIEGAPALLE
VRGEVYMRHDDFDALNARQTANGGKTFANPRNAAAGSLRQLDAEITRARPLAFFAYAWGA
LSAPLAETQFQAIERLKAFGFDTNPLTTLCDGPQEMIAHYRKIEEQRATLGYDIDGVVYK
VNDLALQDRLGFRSTTPRWAIAHKFPAELAWTRLEDITIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIKGLDSKGARIREGKDIRVGDWVQVYRAGDVIPKIADVDLGKRPADA
RAYVYPTTCPECGSDAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQV
EQFYADGWIAEPADIFTLKARYGSGMQQLKNREGWGEKSADKLFQAIEDKRKIPLSRLIF
ALGIRHVGEAASNLIAQHYGSWTAFEAAMGHAKSGDGPAWDDLIGVDGVGQVMAQSLIST
FAQEAERASIDRLVTELWVQDVARPDTEGSPVAGKTVVFTGTLEKMTRAEAKARAERLGA
KVSGSVSAKTDILVAGPGAGSKAKKAADLGIQTLDEDGWLALIDGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgactgataaaaccgcacttcaggagctttccgaggaggaggccaaagccgaattggcg
cggttggctgacctgttggggcgggcgaatgcggcctatcacacgcaggacgcgcccgac
ctgtcagacgcggaatatgatcgcctgaaacgtcgcaatcaagcgattgaggagcggttt
cccggcctcaaacgcgctgacagccccagcgacaaggtcggtgccgcgccggcggaaggc
ttcggcaaggttcggcatgacgtggcgatgctgtccttgggcaatgcctttgaggatgag
gatgttgtcgatttcgatgcgcgcatccgcaaatatctaggactcccgggcgggacgcca
ctggcattcaccgcagagcccaagattgacgggctgtcgctgtcgctgcgctatgaaaac
ggggatctggtacaggccgcgacccgtggggatggtgccgtcggggaaaacgtcaccgcc
aatgcgcgcacgattgataccattccgacgcggatcgagggcgcaccggcgctgcttgag
gtgcgcggcgaagtctatatgcgccacgacgactttgatgcgctgaatgcccgacagacg
gccaacggcggcaagacctttgccaatccgcgcaacgccgccgccggatctttgcgccag
ttggacgccgagattacccgcgcaaggccgctggcgtttttcgcctatgcctggggggcc
ttgtccgcgccgctggccgaaacgcagtttcaagcgatagagcggcttaaggcattcggg
tttgacaccaacccgctgacgacgctctgcgatggcccgcaagagatgatcgcgcattac
cgcaagatcgaagagcaacgcgcaacgcttggctatgacatcgacggcgtcgtctacaag
gtgaacgatctggcgttgcaagaccggcttggctttcgctcaaccaccccccgttgggca
attgcgcataaattccctgccgaacttgcctggacccggctggaggatatcaccattcag
gtcggccgcactggcgcgctgtcgccggtggcgcgcttgcatccggtgaccgtggggggc
gtcgttgtttcgaatgcgacgctccataacgaggattatatcaaagggcttgacagtaag
ggggcccgtatccgcgagggcaaggatatccgcgtcggcgactgggtgcaggtctaccgt
gcgggggacgtgatccccaagatcgcggatgtggaccttggcaaacgacccgcggacgct
agagcctatgtctatccaacgacctgcccggaatgtggcagcgatgccatccgcgaggaa
ggtgatgcggtgcgtcgctgtacgggtggtttgatttgccctgcccaagccgttgagaag
ctgaaacatttcgtttcgcgcgcggcttttgatattgacggtctgggcgcgaaacaggtt
gaacaattctatgccgatggctggatcgcggaaccggcggatatcttcacgctcaaggcg
cgatatggcagcggcatgcagcagctcaagaaccgcgaaggctggggcgagaaatctgcc
gataaactgtttcaggccattgaggataaacgcaaaattcccctgtcgcggctgatcttt
gcgcttggcatccgccatgttggcgaagcggcgtcgaacctgatcgcgcagcattacggc
agctggactgccttcgaggccgcgatgggccatgcaaaatctggggatggccccgcctgg
gacgatctgatcggtgtggacggcgtcggtcaggttatggcgcaaagcctgataagcacc
tttgcccaagaggccgaacgtgcctcgatcgaccggctggtaacggaactgtgggtgcag
gatgtggcgcgccctgataccgaagggtcccccgtggcgggaaaaaccgtagtcttcacc
ggcacgcttgaaaaaatgacccgcgccgaggcgaaggcgcgcgccgaacgtttgggggcc
aaggtctctggctcggtcagtgccaaaaccgatattctggtcgcggggccgggggctggc
tccaaggccaagaaagcggcggatctgggcattcagacattggacgaggacggctggctt
gcgctgatcgacggcgcatga
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integrated database retrieval system
