Sphingobium phenoxybenzoativorans: KFK14_06315
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Entry
KFK14_06315 CDS
T07582
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spph
Sphingobium phenoxybenzoativorans
Pathway
spph03030
DNA replication
spph03410
Base excision repair
spph03420
Nucleotide excision repair
spph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KFK14_06315 (ligA)
03410 Base excision repair
KFK14_06315 (ligA)
03420 Nucleotide excision repair
KFK14_06315 (ligA)
03430 Mismatch repair
KFK14_06315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spph03032
]
KFK14_06315 (ligA)
03400 DNA repair and recombination proteins [BR:
spph03400
]
KFK14_06315 (ligA)
Enzymes [BR:
spph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KFK14_06315 (ligA)
DNA replication proteins [BR:
spph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KFK14_06315 (ligA)
DNA repair and recombination proteins [BR:
spph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KFK14_06315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KFK14_06315 (ligA)
MMR (mismatch excision repair)
DNA ligase
KFK14_06315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KFK14_06315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
HHH_2
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QUT07037
UniProt:
A0A975K9N1
LinkDB
All DBs
Position
1301311..1303407
Genome browser
AA seq
698 aa
AA seq
DB search
MTDPATLSEADAANRLMRLAKEIGKHNKLYHDKDAPEISDAEYDALVRENNALESAFPHL
VRSDSPNAQVGAEPTSALKKVPHAVRMMSLDNGFSDEDIAEFIARVRRFLNLPEDTPVAL
TAEPKIDGLSCSLRYEKGALVLAATRGDGMTGEDVTPNVRTIGDIPGTLTGEGIPDVFEI
RGEVYMAKADFAALNARLLAEAEDPAKARQFANPRNAAAGSLRQKDPAITANRPLRFLAH
GWGEHSAVPADTQIGVMRAIGGWGVPVSERLTCVDTLEALIAHYRRIEAERADMPFDIDG
VVYKVDRLDWQQRLGFVAKSPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPV
TVGGVVVSNVTLHNADEIARLGVRSGDRIVVQRAGDVIPQVVENLTREEPRDAFVYPDHC
PVCGSEAVREEGEVDIRCTGGLICGAQRFERLRHFVSRGALDIEGLGEKTIQEFLDLGWI
KEPADIFRLKAHRDDLLSREGWQEKSVDNLLAAIEAKREPDAARLLFGLGIRHVGAVTAR
DLLKAFITLPKLREVAERANAPDDDTNLVFEAAFDLFAIDGIGKAVVTSLGNFFHEPHNI
EAWEDLLSEVSPPDYIVETRASSVSGKTVVFTGKLETMSRDEAKAQAESLGAKAAGSVSA
KTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIVRGA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccgccaccctgtccgaagccgatgccgccaaccgcctgatgcggctggcg
aaggagatcggcaagcataacaagctgtatcacgacaaggacgcgccggagatcagcgat
gcggagtatgacgcgctggtccgcgagaataacgcgctggagtctgcgttcccacatctg
gtccggtcggattctcccaatgcgcaggtgggggcagagccgacatccgcgctgaagaag
gtgccccatgcggtccggatgatgagcctggacaacggcttttcggatgaggacatcgcc
gagttcatcgcccgtgtccgccggttcctgaacctgcctgaagatacgccggtcgccctg
acggcggagccgaagatcgatggcctgtcctgttccctgcgctacgagaaaggcgcgctt
gtgctggcggcgacgcgcggcgacgggatgacgggtgaggatgtgacgccgaatgtacga
accattggcgatattcccggcacgttgacgggtgaaggcatacccgatgtgttcgagata
cgcggtgaggtctatatggcgaaggcggatttcgccgccctcaacgcccggctgctggcg
gaggccgaggatccggccaaggcgcggcagttcgccaacccccgcaacgccgccgccggg
agcctgcggcagaaggacccggcgattacggccaaccgcccgttacgctttctcgcccat
ggctggggcgagcatagcgcggttccggcggatacgcagattggcgtgatgcgcgccatc
ggcggctggggcgtacctgtgtcggagcgtctgacctgcgtcgatacgctggaggcgctg
atcgcccattaccgccggatcgaggcggagcgggcggacatgcccttcgatattgacggc
gtggtctacaaggtggaccggctcgactggcagcagcggctgggctttgtcgccaagtcg
ccgcgctgggcgatcgcacataaattcccggcggagcgggcgcagacgacgctggaggcc
atcgacatccaggttggccggacgggcaagctgacgccggtcgggcggctgaccccggtg
acggtgggcggcgtggtggtatccaacgtgacgcttcacaatgccgacgagatcgcgcgg
ctgggcgtgcggtcgggagaccggatcgtcgtgcagcgcgcgggcgacgtgatcccgcaa
gtggtggagaatttgacgcgggaggaaccgcgtgacgctttcgtctatcccgaccactgc
cccgtctgcggatcggaagcggtgcgcgaggaaggggaagtcgacatccggtgcaccggc
gggttgatctgcggcgcacagcggttcgagcggctgcggcatttcgtcagccggggggcg
ctggacattgaggggctgggcgaaaaaacgatccaggaatttctcgacctcggctggatc
aaggagccggccgatattttccggctgaaggcgcatcgcgacgatcttctcagccgtgag
gggtggcaggagaagtcggtcgataatctgctggcggcgatcgaggcgaaacgggaaccg
gatgcggcccggctgctgttcggtcttggcatccgtcatgtgggggcggtgacggcgcgg
gatttgctgaaagcgtttattactttgcccaagctgcgtgaagtcgctgagagagctaat
gctcccgatgatgataccaacttagtttttgaagctgctttcgatcttttcgcgatcgat
gggattggaaaggcagtggtgacatctctaggtaatttcttccacgaaccgcacaatatc
gaggcgtgggaggatctgctctccgaggtatcgccgcccgactatatcgtcgagacgcgg
gccagcagcgtgtcgggcaagacggttgtgttcaccggcaagctggagacgatgagccgc
gacgaggcaaaggcgcaggcggaatcgctcggcgcgaaggcggccgggtccgtcagcgcc
aagaccgatcttgtcgtcgcgggaccgggcgcgggcagcaagctcaagcaggcggcggct
ctaggcatcgaggtcatcgacgaggccgcctgggcggagatcgttcggggcgcctag
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