Streptomyces pristinaespiralis: SPRI_2379
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Entry
SPRI_2379 CDS
T04073
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spri
Streptomyces pristinaespiralis
Pathway
spri03030
DNA replication
spri03410
Base excision repair
spri03420
Nucleotide excision repair
spri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPRI_2379
03410 Base excision repair
SPRI_2379
03420 Nucleotide excision repair
SPRI_2379
03430 Mismatch repair
SPRI_2379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spri03032
]
SPRI_2379
03400 DNA repair and recombination proteins [BR:
spri03400
]
SPRI_2379
Enzymes [BR:
spri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPRI_2379
DNA replication proteins [BR:
spri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPRI_2379
DNA repair and recombination proteins [BR:
spri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPRI_2379
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPRI_2379
MMR (mismatch excision repair)
DNA ligase
SPRI_2379
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPRI_2379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
ILEI
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ALC20685
UniProt:
A0A0M4DE16
LinkDB
All DBs
Position
complement(2809803..2811986)
Genome browser
AA seq
727 aa
AA seq
DB search
MAGEQQTNLPAQAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPE
LRTPDSPTQKVAGDYETELTKVEHRERMLSLDNAFDDAELAAWAERVARDVGAPGYHFLC
ELKVDGLAVNLTYEKGRLTRAATRGDGRVGEDITPNARTIAGIPDRLGGDRIPRLVEIRG
EVYFPMEQFQELNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREG
LTIDRLSQAYDLLREWGLPTARHNKVVGSLEEVREFIAYFGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTARAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPECGT
ALRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAAAALTQPLEPAEPP
LVDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPKTGEDKIATVFANQKGEPRRNAVAML
ENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAAVDGVGPTIA
AALKQWFEEDWHREILRKWRAAGVRTEEHGSGEDAGPRPLEGLTVVVTGTLENHTRDGAK
EALQSLGAKVAGSVSKKTSFVVVGDNPGSKYDKAVQLKVPVLDESGFAVLLEEGPEAARE
AAVTEEA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagacgaacctgcccgcccaggcccgggaggagcacgcgctcctg
gccgagcagatcgaggagcaccgcttccggtactacgtgaaggacagccccgtcatcagc
gacgcggagttcgacaagctcctccgggagctcgaagggctcgaggagcggtacccggag
ctgcgcacgcccgactcgccgacccagaaggtcgccggggactacgagaccgagctgacc
aaggtcgagcaccgcgagcggatgctctccctggacaacgccttcgacgacgcggagctc
gccgcctgggccgagcgcgtcgcccgcgacgtcggcgcccccggctaccacttcctgtgc
gagctgaaggtcgacggcctcgcggtcaacctgacctacgagaagggccggctgacccgc
gcggcgacccgcggcgacgggcgcgtgggcgaggacatcactccgaacgcccgcaccatc
gccggtatcccggaccggctggggggcgaccgtattccccgcctcgtggagatccgcggc
gaggtctacttccccatggagcagttccaggagctcaacgcccgccgtgtggccgccggc
gagcagccctacgccaacccgcgcaactccgcctccggttcgctgcgccagaaggacccc
aaggtcaccgccacgctgccgctgcgcatggtggtgcacggcatcggcgctcgcgagggc
ctgacgatcgaccggctctcccaggcgtacgacctgctccgcgagtggggtctgcccacc
gcccggcacaacaaggtggtcggctcgctggaggaggtgcgggagttcatcgcctacttc
ggtgagcaccgccactccgtggagcacgagatcgacggggtcgtggtcaagctcgacgag
atcccgctgcagggccgtctcgggtcgaccgcgcgtgcgccgcgctgggcgatcgcctgg
aagtacgcgccggaggaggtcaacaccaagctggtcaacatccgcgtcggtgtcggccgc
accggccgtgtcaccccgtacgcccaggtcgagccggtcacggtggcgggctccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtcaaggccaagggcgtcctcatcggtgac
acggtggtgctgcgcaaggccggtgacgtcatccccgagatcctcggcccggtggtggac
ctgcgggacggcagcgagcgggagttcgtgatgccggccgagtgccccgagtgcggcacc
gcgctgcggcccatgaaggagggcgacgtcgacctgcggtgccccaacgcccgctcgtgc
cccgcccagttgcgggagcgactcttctacctggcggggcgcaaggcactcgacatcgag
catttcggttacgtcgcggccgcggctctcacccagccgctcgagcccgcggagccgccg
ctcgtcgacgagggcgacctgttcgacctcaccatggagcagctgctgcccatcaaggcg
tacgtcctcgaccaggacagcggcctccccaagcgcgacccgaagaccggcgaggacaag
atcgcgacggtgttcgccaaccagaagggcgagccgcgcaggaacgccgtggcgatgctg
gagaacatcgcggcggccaaggagcgcccgctggcccgcatcatcacgggactgtcgatc
cgtcatgtgggcccggtcgccgccgaggcgctcgcccgtgagttccgctccatcgaccgt
atcgagcaggcgacggaggaggagctcgcggcggtcgacggtgtgggccccaccatcgcc
gccgcgctcaagcagtggttcgaggaggactggcaccgcgagatcctgcgcaagtggcgt
gcggcgggcgtgcggacggaggagcacggctcgggggaggacgcggggccgcgtccgctc
gaagggctgacggtcgtcgtcaccggaacgctggagaaccacaccagggatggcgcaaaa
gaagcgctccagagcctcggagcgaaagtggccggttccgtatcgaagaagacgagcttc
gtggtggtcggtgacaatcccggttccaagtacgacaaggcagtgcagttgaaggtgccg
gttctggacgagtcgggcttcgcggtcctcctcgaagagggaccggaggcggctcgtgag
gctgctgtgaccgaggaggcgtga
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integrated database retrieval system