Scylla paramamosain (green mud crab): 135094734
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Entry
135094734 CDS
T11531
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sprm Scylla paramamosain (green mud crab)
Pathway
sprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135094734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sprm03041
]
135094734
Spliceosome [BR:
sprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135094734
Complex C
U5 SnRNP specific factors
135094734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
135094734
NCBI-ProteinID:
XP_063851139
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All DBs
Position
46:5889909..5896501
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AA seq
975 aa
AA seq
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MDVDLYDEFGNYIGPELDSDEEEEEEDDDDYPDPEQDVNGFEEEEGGPGEEEEVASQAVV
LHEDKQYYPSAADVYGPEVETIVQEEDAQPLTQPIIQPVKVKKFSHVEKDLPITSYDLEF
LADLMDNPGLVRNISLIGHLHHGKSTFVDCLIHQTHPEFRSKEDVPVRYTDTLFTEGERG
LSIKATPITLVMQDVRNKSFLLNIFDTPGHVNFSDEVTAAMRLSDGVVLFIDAAEGVMLN
TQRLLKHAAQERLALTVCINKVDRLILELKLPPQDAYYKLRHIVEEVNSLLQQYTDQDNP
QIISPLLGNVCFASSQYSLCFTLKSFAKLYSQHYGYDIPLEDFSRRLWGDIYFNPRTRKF
TKKPPTSTAQRSFVEFILEPLYKIFAHIVGDADTHLESLMEELGLHMSKEEQRMNIRPLL
KLFMSKFIGEFDGFVDMCVQHVPSPQAYGKHKVESTYTGPLDSDLALTMMQCDPEGPLVV
HTTKQYPNEDATTFHVFGRVISGTIRANQEVRVLGEKYTLMDEEDSRVLTVGRLWVSEGR
YSIEVNAVPAGNWVLIEGIDEPIVKTSTLTDLPPASELHIFRPLKFNTQSVIKIAVEPVN
PSELPKMLDGLRKVNKSYPLLNNRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVA
DPVVSFCETVVDTSSLKCFAETPNKRNKVTMIAEPLERGLAEDIEGEVVQISWDRRRLGE
FFQTRYDWDVLAARSIWAFGPDHSGPNILVDDTLPSEVDKNLLSSVRDSIVQGFQWGTRE
GPLCEEPIRNCKFKILDAVIAEEPLHRGGGQVIPTARRVAYSAFLMATPRLMEPYYFVEI
QAPADCVSSVYTVLTKRRGHVTQDAPVAGSPLYTIKAFIPAIDSFGFETDLRMHTQGQAF
CLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDP
MLLELARQDVTLNYA
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggacctttatgacgagttcggcaactacatcgggccggagcttgactcagat
gaagaggaagaggaggaggatgacgacgactaccccgaccctgagcaggacgtgaatggc
tttgaggaggaggaggggggaccgggggaggaggaggaggtggcgtcgcaggcagtggtg
ttgcacgaggacaagcagtactaccccagtgctgctgatgtgtacggcccagaggtggaa
actattgtgcaagaggaggatgcccagccactcacccagcctatcattcagccggtgaag
gtgaagaagtttagccatgtggagaaggacctgcccatcaccagctatgacctggagttc
ctggccgacctgatggacaacccgggcctggtgcgcaacatttccctcattggtcacctg
caccacggcaagagcacctttgtggactgcctcatccaccagacacacccagagttcagg
agcaaggaggatgtgccagtgaggtacacagatacgctgttcacggagggggagcgtggc
ctcagcatcaaggccacacccatcacgctggtcatgcaggatgtgcgcaataaaagcttc
ctcctcaacatcttcgatacgcctggacatgtcaacttctcagatgaggtgactgcggca
atgcggctgagcgatggcgtggtgctgttcatcgacgcggcagagggtgtgatgctgaac
acgcagcggctgctgaagcatgcggcgcaggagaggctggccctcaccgtgtgcatcaac
aaggtggaccgcctcatcctggagctgaagctgccgccgcaggacgcgtactacaagctg
cggcatattgtggaggaggtgaactccctgctgcagcagtacacagaccaagacaaccct
cagatcatctcccccctgctgggcaacgtgtgctttgccagctcccagtattccctctgc
ttcaccctcaagtcctttgccaagctgtactcgcagcactacggctacgatatccccctg
gaggacttctcccgccgcctgtggggggacatctacttcaacccgcgcactaggaagttc
accaagaagcctcccacatccacagcacagaggagctttgtggagttcatcctggagccg
ctgtacaagatcttcgcacacatcgtgggtgatgcggacacacacctggagtcgctgatg
gaagaactgggcctgcacatgagcaaggaagagcagcgcatgaacatccggccgctgctc
aagctgttcatgagcaagttcattggggagtttgacgggtttgtagacatgtgcgtgcag
cacgtgccgtcccctcaggcctacggcaagcacaaggtggagtccacctacacagggcca
ctggacagtgacctggccctcaccatgatgcagtgcgacccagaggggccccttgtggtc
cacaccaccaagcagtaccccaatgaggatgccaccaccttccacgtgttcggccgcgtt
atctctggcaccatccgggccaaccaggaggtgcgggtgctgggggagaagtacacgctg
atggacgaggaggactcacgtgtgctgactgtggggcggctgtgggtgtcggagggacgt
tacagcattgaggtgaatgccgtgcccgctgggaactgggtgctcatcgagggcatcgac
gagcccattgtcaagacgtccacgctcaccgacctgccgccagccagcgagctccacata
ttccggccgctcaagttcaacacacagtcggtgatcaagatcgcggtggagccggtgaac
ccctctgagctgcccaagatgttggatggcctgcgcaaggtgaacaagtcctacccgctg
ctgaacaaccgcgtggaggagtctggggagcacgtcatcctgggtacgggtgagctgtac
ctggactgtgtcatgcacgacttgcgcaagatgtactccgagatcgacatcaaggtggca
gaccctgtggtgagcttctgtgagaccgtggtggacacctcctccctcaagtgctttgct
gagacgcccaacaagcgcaacaaggtgaccatgatcgctgagcccctggagcgtggcctg
gcagaggacatcgagggggaggtggtgcagatctcctgggacaggcggcgcctcggggag
ttcttccagacgcgctatgactgggacgtgctggcggcccggtccatctgggccttcggg
ccggaccacagcggccccaacatcctggtggacgacacgctgccctccgaggtggacaag
aatctgctatcctctgtgcgagactccattgtgcagggcttccagtggggcacccgcgag
gggccactgtgcgaggaaccaatcaggaactgcaagttcaagatcctagatgcagtgatt
gcagaggagccattgcaccgtggaggtggccaggtgatccccacagcgcggcgcgtagcc
tactctgccttcctgatggccacgccgcgcctcatggagccgtactacttcgtggagatc
caggcgccagcagactgcgtgtcctccgtgtacaccgtgctcaccaagcggcgtggccac
gtcacgcaggatgcgcctgtggctggctccccactctacaccatcaaggccttcatcccc
gccattgactccttcggctttgagactgacctgcgcatgcacacgcagggccaggcattc
tgtctcagtgtgttccaccactggcagatcgtgcccggcgacccgctggacaagagcatc
gtgatccgccccctggagccgcagcctgccacgcacctggccagggagttcatgatcaag
acgcgccgcaggaagggcctgtccgaggatgtgtccatcaacaagttcttcgacgacccc
atgttgctagagctggcccgccaggacgtcaccctcaactatgcctag
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