Salinivibrio proteolyticus: N7E60_04055
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Entry
N7E60_04055 CDS
T08723
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spro
Salinivibrio proteolyticus
Pathway
spro03030
DNA replication
spro03410
Base excision repair
spro03420
Nucleotide excision repair
spro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N7E60_04055 (ligA)
03410 Base excision repair
N7E60_04055 (ligA)
03420 Nucleotide excision repair
N7E60_04055 (ligA)
03430 Mismatch repair
N7E60_04055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spro03032
]
N7E60_04055 (ligA)
03400 DNA repair and recombination proteins [BR:
spro03400
]
N7E60_04055 (ligA)
Enzymes [BR:
spro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N7E60_04055 (ligA)
DNA replication proteins [BR:
spro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N7E60_04055 (ligA)
DNA repair and recombination proteins [BR:
spro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N7E60_04055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N7E60_04055 (ligA)
MMR (mismatch excision repair)
DNA ligase
N7E60_04055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N7E60_04055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WBA15479
LinkDB
All DBs
Position
823344..825353
Genome browser
AA seq
669 aa
AA seq
DB search
MAYSKEQLDALKHQLNYHAYRYYVEDSPELPDAEYDRLMQTLLAIEAEHPEWVTADSPSQ
RVGGAPLSAFETVTHELAMLSLGNAFSDDDLADFERRVKDRLGDGESVTYTCEPKLDGLA
VSLIYENGVLVQAATRGDGTTGENITHNVKTIRNVPLTLQAGDWPTRLEVRGEVFMPKAG
FEALNEAALKRGDKTFANPRNAAAGSLRQLDPKVAASRPLSFYAYAVGIMSTPFGEGQFQ
RLQKLKQWGLALSPEVKQVTDLAGVKRYYQDILARRDALPYEIDGVVIKVDSIESQQTLG
FVARAPRWAVAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLAPVFVGGVTVSNATLHNG
DEIERLGVHIGDTVVIRRAGDVIPQVVGVVESRRPEHAKPIVFPTACPVCDSAVTRVEGE
AVARCTGGLICLAQRKEAIKHFSSRKAMDIDGLGDKIVEQLIEKELIHTPADLFRLTAGR
VTALDRMGPKSAQNLIDALEKAKATTLPRFIYALGIREVGEATAQNLATHFKTLDALRAA
DEEALIAVPDVGTIVAGHIVRFFAEPHNQDVLDALLETGIHWPEVAQQTDAQAQPLAGKT
IVLTGTLSQMSRTDAKAALQALGAKVTGSVSAKTDILIAGEAAGSKLTKAQDLGVTVLDE
DGMLALINQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcttacagcaaagaacaactggatgcgttgaagcatcagcttaactaccatgcctat
cgctactatgtcgaagacagccctgagctgccggacgcggagtacgatcgtttaatgcaa
acgttgctggccattgaagcagagcaccctgaatgggtgacggctgattcgccgagtcag
cgtgtgggtggcgcaccgcttagcgcgtttgagacggtcacccacgagttggcgatgtta
tctttgggcaatgccttcagtgatgacgatctggctgactttgaacgccgtgttaaagac
agactcggtgatggtgagtcggtcacctatacctgtgagccaaaacttgatggcttggcg
gttagcttgatttacgaaaatggtgtcttggtgcaagctgctacccgaggcgatggcacc
acaggtgaaaacatcacccacaatgtgaaaacgattcgtaacgtcccgttgacgttgcag
gcgggagattggccgacgcgccttgaggtgcgcggtgaagtctttatgcctaaagcgggc
tttgaggcactgaatgaagcggccctcaagagaggggataaaacctttgccaacccgcgc
aatgctgccgctggtagtctgcgtcaactggaccccaaagtcgccgccagtcgtccgctt
agtttttacgcctatgccgttggcattatgtcgacaccgtttggcgaagggcagttccaa
cgcctgcaaaagcttaaacagtgggggctagcgcttagccctgaagtcaaacaggtgacg
gatttagctggtgtcaaacgctactaccaagacatcttagctcgacgtgatgcattgccc
tatgaaattgacggggtggtgataaaagtcgacagcattgaaagccagcaaaccctaggg
tttgttgcgcgcgctccccgctgggcggttgcttataaattcccggctcaagaagaaatt
accaccctcaacgatgttgagttccaagtgggacggacgggagccatcacaccggtcgca
aaactggcgcctgtttttgtcggaggcgtgacggtcagcaatgcgaccttacacaacggc
gatgaaattgagcgcttaggggttcatatcggtgataccgtggtgatccgtcgcgcgggt
gatgtgatcccacaagtggtcggcgtggtagaaagccgccgtccagaacatgctaagccg
attgtttttccaactgcttgtcctgtgtgtgattctgcggtcactcgtgttgagggtgaa
gcggtggcgcgttgtactggcgggttaatttgccttgcgcaacgtaaagaagccattaag
catttctcctcgcgtaaggcgatggatattgatggcctcggtgataaaatcgtcgagcag
ctgattgaaaaagagctgatccatactcccgctgatctgtttcgcctcacggcgggccgc
gtcaccgccttggatagaatggggccaaaatcagcacaaaatctgattgatgcgctagaa
aaagccaaagcgaccaccttgcctcgatttatttatgcgttggggatccgtgaggttggc
gaagccacggcacaaaatctggccacacattttaaaaccctcgacgcgctgcgcgccgcg
gatgaagaagccttgattgctgtccctgatgttgggacgattgtggcgggccatattgtt
cgcttctttgccgagccccacaaccaagatgtgttggatgcactgttggaaactgggatc
cactggccggaagtggcccaacaaacggatgcgcaagcacagcctttggcgggaaaaacc
atcgtgttgactggtaccttgtcgcaaatgtcgcgcacggatgcaaaagccgcgctgcaa
gcgttaggggctaaagtgaccggaagcgtatcggcgaaaacagatatcttgattgccggt
gaagccgctggctcgaaactgaccaaagcgcaagatttaggtgtgaccgtgttagatgaa
gacggcatgctggcattgattaaccaataa
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