Sphingomonas sp. R1: OIM94_10115
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Entry
OIM94_10115 CDS
T11062
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sprr Sphingomonas sp. R1
Pathway
sprr03030
DNA replication
sprr03410
Base excision repair
sprr03420
Nucleotide excision repair
sprr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sprr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OIM94_10115 (ligA)
03410 Base excision repair
OIM94_10115 (ligA)
03420 Nucleotide excision repair
OIM94_10115 (ligA)
03430 Mismatch repair
OIM94_10115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprr03032
]
OIM94_10115 (ligA)
03400 DNA repair and recombination proteins [BR:
sprr03400
]
OIM94_10115 (ligA)
Enzymes [BR:
sprr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OIM94_10115 (ligA)
DNA replication proteins [BR:
sprr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OIM94_10115 (ligA)
DNA repair and recombination proteins [BR:
sprr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OIM94_10115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OIM94_10115 (ligA)
MMR (mismatch excision repair)
DNA ligase
OIM94_10115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OIM94_10115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
DUF7092
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UYY75891
LinkDB
All DBs
Position
2078992..2081118
Genome browser
AA seq
708 aa
AA seq
DB search
MTLPRTPDEAAAELEKLAAEIAHHNRRYHDEDAPEISDADFDALVRRNAEIEAAFPALVR
ADSPSRQVGATPSGPLAKVAHARQMFSLDNGFSDEDIADFLGRVRRFLKLPDEAVVELTA
EPKIDGLSCSLRYEHGLLVQALTRGDGRIGEDVTPNVRTIADIPHRIEGAPPVCEVRGEV
YMAKADFAALNARLLADAAETGKDARQFANPRNAAAGSLRQKDAGVTAARPLRFLAWGWG
ELSDPLAERQYEAIDRIRAWGFPVSDLFVRAPTLDDALAQYRAIETRRADLPFDIDGVVY
KVDRLDWQERLGYVGRAPRWGLAHKFPAERAQTTLVAIDIQVGRTGKLTPVARLEPVTVG
GVVVSNATLHNADEIARLGVRPGDRVVLQRAGDVIPQIVENLTRDALRDAWHFPAHCPIC
ASEAVAEEGEVDVRCTGGLICPAQRLERLKHFVSRGALDIDGLGEKTLIELLDLGWIAEP
ADIYRLARYREQLLGREGWQEKSVDSLLAAIEAKRAPDAARLLFGLGIRHIGAITARDLL
KRYVTLPALEALADELIALRDATLPVLGETEAKHRTRLDKAIAERIGVENVGAAVGHALA
DFFHEPHNRSVWRDLLEAVTPPPFVVEARESEVTGKTLVFTGTLETLSRDEAKAQAERLG
ARVSGSVSAKTDLVIAGPGAGSKLKKAADLGIRVISEADWVSIVNASE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgacgctaccccgcacgcccgacgaagccgccgccgagctggaaaagctcgccgccgag
atagcgcaccataaccgccgctatcacgacgaggacgcccccgagatcagcgacgcggat
ttcgacgcgctggtccgccgcaacgcggaaatcgaagcggccttcccagcgctggtccgc
gccgactccccgtcgcggcaggtcggcgcgacaccctcgggcccgctcgccaaggtggcg
catgcacggcagatgttcagcctcgacaacggcttttcggacgaggacatcgccgatttc
ctcggccgcgtccgccgcttcctcaagctccccgacgaggccgtggtggaactcaccgcc
gagcccaagatcgacggcctgtcctgctcgctgcgctacgagcacggcttgctggtccag
gcactcacccgcggcgatggccggatcggcgaggacgtgacaccgaatgtccgcaccatc
gcggacatcccccaccgcatcgaaggcgcgccgccggtgtgcgaagtgcgcggcgaagtt
tacatggcgaaggccgatttcgccgcgcttaacgcccggctgctcgccgacgcggccgag
acgggcaaggacgcccgccagttcgccaatccgcgcaatgccgctgcgggatcgcttcgc
cagaaggatgccggggtcaccgccgcacggccgctgcggttcctcgcctggggctggggc
gagctgagcgacccgctcgccgagaggcagtatgaggcgatcgaccgcatccgcgcctgg
ggctttccggtctccgacctgttcgtccgagcgccaacgctggacgatgcgctcgcccag
tatcgcgcgatcgagacgcggcgcgccgatctgcccttcgacatcgacggcgtggtctac
aaggtcgaccggctcgattggcaggagcggctgggctatgtcggccgcgcgccgcgctgg
ggcctggcgcacaaattccccgccgagcgcgcccagacgaccctcgtggcgatcgacatc
caggtcggccgcaccggcaagctgaccccggtcgcgcggctggagccggtgacggtgggc
ggcgtcgtcgtcagcaacgcgacgctgcacaatgccgacgagatcgcgcggctgggggtc
cgccccggcgaccgcgtggtgctccagcgcgccggcgacgtgatcccgcagatcgtcgag
aacctgacgcgcgacgcgctgcgcgacgcgtggcacttccccgcccactgcccgatctgc
gcctccgaggcggtggcggaagaaggcgaagtcgatgtccgctgcaccggcggactgatc
tgcccggcacagcgactggagcgtctcaagcatttcgtcagccggggtgcgctcgacatc
gacggcctgggcgagaagaccctgatcgaattgctcgatctcggctggatcgccgaaccc
gccgacatctatcgccttgcgcgctaccgcgaacagctgctcgggcgcgaaggctggcag
gaaaagtccgtcgacagcctgctcgccgcgatcgaggcgaagcgcgcccccgatgccgcg
cggcttctgttcgggctgggcatccgccacatcggcgcgatcaccgcacgcgacctgctc
aagcgctacgtcaccctgcccgcgctggaagccctggccgacgagctgatcgcgctgcgc
gatgccacgctccccgtcctgggcgagaccgaggcgaagcaccgcacccgcctcgacaag
gccatcgccgagcgaatcggcgtcgaaaatgtcggcgcagcggtgggccatgcgctcgcc
gactttttccacgagccgcacaatcgcagcgtgtggcgggatttgctggaggcggtgacg
ccgccacccttcgtcgtcgaagcgcgcgaatcggaagtgaccggcaagacgctggtgttc
accggcacgctggagaccttgagtcgcgacgaggcgaaggcgcaggcggaacgactgggc
gcgcgcgtctccggctcggtctccgccaagaccgatctggtgatcgccggtcccggggcc
ggttcgaagctgaaaaaggcggcggatctgggaatccgcgtcatcagcgaggcggattgg
gtatcgattgtaaacgcctccgagtga
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