Sphingobacterium sp. R2: VXM68_00320
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Entry
VXM68_00320 CDS
T10631
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sprz Sphingobacterium sp. R2
Pathway
sprz03030
DNA replication
sprz03410
Base excision repair
sprz03420
Nucleotide excision repair
sprz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sprz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VXM68_00320 (ligA)
03410 Base excision repair
VXM68_00320 (ligA)
03420 Nucleotide excision repair
VXM68_00320 (ligA)
03430 Mismatch repair
VXM68_00320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sprz03032
]
VXM68_00320 (ligA)
03400 DNA repair and recombination proteins [BR:
sprz03400
]
VXM68_00320 (ligA)
Enzymes [BR:
sprz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VXM68_00320 (ligA)
DNA replication proteins [BR:
sprz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VXM68_00320 (ligA)
DNA repair and recombination proteins [BR:
sprz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VXM68_00320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VXM68_00320 (ligA)
MMR (mismatch excision repair)
DNA ligase
VXM68_00320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VXM68_00320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
Nlig-Ia
PucR
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
XCY05420
LinkDB
All DBs
Position
71273..73297
Genome browser
AA seq
674 aa
AA seq
DB search
MLAMDIEKKIKDLTAELNQYNYQYYVLANSVISDYDFDLKLKELEALEAQYPAFADPNSP
TQRVGGDITSRFQTERHRWPMLSLGNTYSQEELLDFDQRIRKIIGDQFEYVCELKFDGLS
ISLTYENGKLSKAVTRGDGTQGDVVTNNVKTIRSIPIKLKEGAYPAQFEIRGEIFMHKSA
FLRLNKEREDNAEPMYANPRNFASGTIKLQDSAEVAKRPLDCFLYFLYCDNRTNLFHDHW
NSLNHVKEWGFHVSEHSRKCTAISDVFAFIDYWEVERHNLGYEIDGIVIKVNDYAQQEEL
GFTAKNPRWAISYKFKAERVETELNSISYQVGRTGAVTPVANLQPVQLAGTTVKRASLHN
ANEIARLDLHEHDTVFVEKGGEIIPKIIGVNYTKRLPGSTSFVYPTSCPECGSELIRQDG
EAVHYCPNETGCPPQIIGKMQHFIGRKMMDIEGMGDETVDNFFKKGLLHNIVDIYGLKDH
QEDLQQLERFGQKSIENMLKGIEKSKEKPFEKVLFSLGIRHVGETIAKKLALHFKNIDAL
AKASAEEIESVQDIGRRIAESVREYLDNPIHQEQITALRNYGLNFEIKEKEIVLTSNLLE
GKTFLISGVFADHSREELAALIESHGGKMVSAISAKLSYLVAGDKMGPSKLAKAEKLGIP
MINDKELFQLINPK
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgatggatattgaaaaaaagataaaagacttaaccgcagaactcaatcagtat
aactaccagtactatgtattggcgaacagtgttatttctgactacgacttcgaccttaaa
ctaaaggaacttgaagccctggaagcccaatatccagcgtttgctgatcccaattcccct
acacagcgtgttggcggggatataacttcccgatttcaaacggaaagacaccgctggccc
atgctctctttaggcaatacatacagccaagaagaattgcttgatttcgaccagcgtatc
cgaaaaatcattggcgatcagtttgaatacgtctgcgaattaaaattcgatggtttatcc
atcagcttgacgtatgaaaatggcaagctaagtaaggcggttactcgtggcgatggcacg
cagggcgatgtggttaccaacaatgttaagacaatccgatcaattccgatcaaactcaaa
gaaggagcttatccagcgcaattcgaaatacgcggagaaatatttatgcataaatcagct
tttctgcgtttgaacaaagagcgcgaagataatgcggagccaatgtatgctaatccgaga
aatttcgcttccggaacgattaaactgcaagactctgctgaggttgcgaagcgaccatta
gactgtttcctttactttttgtattgcgacaacagaacaaatctttttcacgaccattgg
aatagcttgaaccatgtaaaagaatggggatttcatgtcagcgaacatagtagaaaatgt
accgctataagcgatgtatttgcatttatcgattattgggaggtcgaacgccataatctt
ggctatgaaatcgatggaattgtgattaaagtaaatgattatgcgcaacaggaagaactt
ggctttaccgccaaaaatccaaggtgggcaatatcctataagttcaaggctgaacgtgta
gaaaccgaattgaactccatcagttatcaagtcggtcgtacaggtgctgttactccagta
gccaatcttcaacctgtacaacttgcagggactacggtcaaacgtgcgtccctacacaat
gcaaatgaaattgctcgcctggatctgcacgaacatgatacagtatttgtggaaaagggg
ggagaaatcatacccaaaattattggcgttaattacaccaagagattgcctggatcaaca
agctttgtctacccaacatcatgccccgaatgtggctccgaactcatacgccaagatggc
gaagcggtacactactgccctaatgaaacagggtgtcccccccaaattattggtaaaatg
cagcattttatcggacgcaaaatgatggacatcgaaggtatgggcgacgaaacggttgac
aacttcttcaaaaaaggcttattacacaatattgttgatatttatggcctaaaagaccat
caggaagatttacagcaactggaacgtttcggtcagaaatccatagaaaatatgctgaaa
ggcattgagaagtctaaagaaaaaccgtttgaaaaagtactattctctttgggcatacgt
cacgttggtgaaacgatcgcaaagaaattagcgctgcactttaaaaatattgatgccttg
gcaaaagcatcggcagaagaaatcgaaagcgtacaggatattggacgtcgcattgccgaa
agcgttagagaatacttggacaatccgattcatcaagaacagattacggctttaagaaat
tacggcttaaattttgaaattaaggaaaaagaaattgttttgaccagcaacttactggaa
gggaaaacttttttaatatccggtgtcttcgcagaccactcgcgggaagaattagcggca
ttgattgagagtcatggcggaaagatggtttcagcgatttctgccaaattaagttatctc
gtggcaggagataaaatggggccttctaaacttgcgaaagcagaaaaattaggcatcccg
atgattaatgacaaagaactattccaactcattaatccaaaataa
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