Sphingobacterium psychroaquaticum: E2P86_10680
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Entry
E2P86_10680 CDS
T05967
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spsc
Sphingobacterium psychroaquaticum
Pathway
spsc03030
DNA replication
spsc03410
Base excision repair
spsc03420
Nucleotide excision repair
spsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2P86_10680 (ligA)
03410 Base excision repair
E2P86_10680 (ligA)
03420 Nucleotide excision repair
E2P86_10680 (ligA)
03430 Mismatch repair
E2P86_10680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsc03032
]
E2P86_10680 (ligA)
03400 DNA repair and recombination proteins [BR:
spsc03400
]
E2P86_10680 (ligA)
Enzymes [BR:
spsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E2P86_10680 (ligA)
DNA replication proteins [BR:
spsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2P86_10680 (ligA)
DNA repair and recombination proteins [BR:
spsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E2P86_10680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2P86_10680 (ligA)
MMR (mismatch excision repair)
DNA ligase
E2P86_10680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2P86_10680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QBQ41587
UniProt:
A0A1X7IG57
LinkDB
All DBs
Position
2525873..2527897
Genome browser
AA seq
674 aa
AA seq
DB search
MLPDIQEKIQKLTQELNAYNYQYYVLANSVISDYDFDIKLKELEALEQQYPEYKDPNSPT
QKVGGDLTQKFNTVQHRWPMLSLGNTYNEQELRDFDERVRKIVGDNVQYVCELKFDGLSI
SITYENGKLVRAVTRGDGTQGDDVTNNVKTIRSVPHQLHASSFPDQFEIRGEIFMHHAAF
ARLNKQREEAGEQVYANPRNFASGTIKLQDPKEVAKRPLDCFLYFLYAENRNRLFESHWD
SLAAVKRWGFQISEHSKLCSSIDEILAFIDYWDTARHQLSYDIDGIVIKVNDYAQQEELG
FTAKSPRWAISYKFKAERVETTLESVTYQVGRTGAVTPVANLTPVLLAGTTVKRASLHNA
NEIARLDLHAGDTVFVEKGGEIIPKVIAVNLEKRIEGASPILYPTHCPECNTALVRQEGE
AVHYCPNEDGCRPQIVGKLQHFIGRKMMDIQGMGDETIETFYDLGLLRKISDIYTLKDHR
SALTQIERFGEKSIENMLAGIEQSLEKPFEKVLFGLGIRHVGETIAKKLAAHFKNIDAMG
EASLEDMAAVPDIGGRIAESIHAYLHNPEHQEEIARLKAAGLPFAIIEKEQVFAGDSLTG
KTFLISGVFADFSREELAELIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPI
ISDKEVLAMINQSN
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgttaccagatattcaggaaaaaatacaaaaacttacacaggagctcaacgcctataac
tatcaatattatgtcttagcgaactccgttatttcagactatgactttgatatcaagcta
aaagagttagaggcgctagagcaacaataccctgaatataaggatcccaattcgcccaca
caaaaagtaggtggcgatcttacgcagaaattcaataccgttcaacatcgttggcccatg
ctttccttgggcaatacctataatgaacaagagctacgtgattttgatgaacgtgtacgt
aagatcgttggcgacaacgttcaatatgtctgcgagttaaagttcgatggtctttcgata
tcgattacctatgagaatggaaagctcgtgcgtgcggtcacgcggggcgatggtacacag
ggcgatgatgtaaccaataatgtgaagacgatacgcagtgtgccacatcagttacatgcc
tcctcttttcctgaccagtttgaaattcgcggtgagatcttcatgcaccatgctgctttt
gcacgtctgaataagcaacgcgaggaagctggcgaacaagtgtatgctaatccgcgtaac
tttgcttctggaacgattaaactacaagaccctaaagaagtcgctaaaagacctttagac
tgcttcctctatttcttatatgccgagaatagaaaccgcttgtttgaaagccattgggat
agtttagctgccgtaaagcgttggggcttccaaatatcagagcacagcaaattgtgtagc
agcatagacgaaattcttgcttttatcgattattgggatacagcaaggcatcaactgagc
tacgatatcgatggtatcgtaatcaaagttaatgattacgcacaacaagaggaactcggc
tttacggccaaatcaccacgatgggcgatttcctataaatttaaagccgagcgtgtagaa
acgacgctggagagtgtgacctatcaggtggggcgtaccggtgcggttacaccagtagcc
aacctaacccctgtcttgctggccggaaccaccgtcaaacgtgcgtctttacataatgcg
aatgaaatagcacgtctagatctccatgccggggatacggtatttgtcgaaaaaggaggc
gaaattatcccgaaggtcatcgcggtcaatctagagaaacgcatcgaaggagcatcccct
attttatatcctacacactgcccggaatgtaataccgccttggtcagacaggaaggagaa
gccgtacattactgtccgaatgaagatggctgcaggccacaaatagtaggtaaactacag
cactttattggtcgcaaaatgatggatattcaaggcatgggcgacgagaccatagaaacg
ttctacgatttaggcttattacgtaagatatcagacatctataccctgaaagatcaccgt
agtgcgttaacacagattgaacgttttggcgaaaaatcgatcgagaatatgctagcgggc
atcgaacagtcattagagaaacctttcgagaaggttctttttgggttgggcatccgtcat
gtcggcgaaaccatagccaaaaaactggctgcgcatttcaagaatatcgatgctatgggt
gaagcttctctcgaagatatggctgctgttcccgatattggtggacgtattgcggagagt
atacacgcttacctgcacaaccccgagcaccaggaagaaattgcgcgtttaaaagcagcg
ggtctaccatttgcgattatcgaaaaagagcaggtttttgcgggcgacagcctgacggga
aagacattcttgatctccggtgtttttgcagacttttcccgcgaagaattggcggaactc
atagaatcccatggtggaaagatggtttcctctatctccgctaagcttaactacctggta
gcaggagacaaaatggggccttccaaattagcaaaagctgaaaaactacaggtacccatt
atctcagataaagaggttttagcgatgattaatcaatcaaattaa
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integrated database retrieval system
