Shewanella psychromarinicola: EGC80_14215
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Entry
EGC80_14215 CDS
T09848
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr01501
beta-Lactam resistance
spsr01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
EGC80_14215
01503 Cationic antimicrobial peptide (CAMP) resistance
EGC80_14215
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
spsr02000
]
EGC80_14215
01504 Antimicrobial resistance genes [BR:
spsr01504
]
EGC80_14215
Transporters [BR:
spsr02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
EGC80_14215
Antimicrobial resistance genes [BR:
spsr01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
EGC80_14215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF6286
Motif
Other DBs
NCBI-ProteinID:
AZG35919
UniProt:
A0A3N4DN36
LinkDB
All DBs
Position
complement(3232450..3235701)
Genome browser
AA seq
1083 aa
AA seq
DB search
MSIINTSVNRPVTVWMFMLAVMLFGMVGFSRLAVKLLPDLSYPSVTIRTAYDGAAPVEIE
QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTNMDMASLEVREKIDTIELPLD
INKPLLLRFNPNLDPIMRLAFSVPNADAEQLKQMRTFADEELKRRLEALSGVAAVRLSGG
LEQEVHIELNQQRLSQLNLNADHIKRRINEENINLSAGKVIQGDKEYLVRTLNQFNSLEE
LGQVIVYRNGQTLVRLSDIAVISDAYKERSDITRIGEVESIELAIYKEGDANTVAVANKL
RTELDKMNQTDESNQLEIIYDQSEFIESAVNEVTSAALFGSLLAMLVIYLFLRDIIATLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRYKSQGMSKT
EAAVTGCKEVSGAIFASTLTTLAVFVPLVFVDGIAGALFADQALTVTFALLASLFVALTA
IPMLASRQGFTSLPQPVEVTAMPKPTTRKGLIAYYLLAVLLFPFKLLFSYLPAGLLTATI
VISRFVSSVFGLLLKPICAGFNVLYRIVESFYYRVLRHALRHQVLTLVIALVMTLASSSL
LPKLGVELIPPMNQGEFYVEILLPPGTEVSETDAVLQQLALAIKDRDDVKHAYSQAGSGG
LMTSDTARGGENWGRLQVVLADPLAFNTVSQVLRNTARNIPELEAQIEHPELFSFKTPLE
IELSGYDLVQLKQSADRLVNALSESDRFSDINTTLRDGQPEISIRFDHARLAALGMDAPT
VANRIAQRVGGTIASQFTVRDRKVDILVRSELSERDQISDIESLIINPNSAQPIPLSAIA
TIDLQIGPSAINRISQQRVAIVSSNLAYGDLSEAVLQAQQILAKQQFPSSIQARFGGQNE
EMEQSFESLKIALVLAIFLVYLVMASQFESLLHPLLILIAVPMAVAGSIIGLFITGTHLS
VVVFIGLIMLAGIVVNNAIVLVDRINQLRREGKDKLSAINEAAQSRLRPIMMTTLTTTLG
LLPMAIGIGDGSEVRAPMAITVIFGLSMSTLLTLLVIPTLYALFDRKQYTQNDLELNTAE
TLA
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataatcaatacttctgttaaccgtcccgtcacggtgtggatgttcatgttagct
gtgatgctgtttggtatggtggggttttctcgcctcgcggtaaaactattacccgattta
agctatcccagcgtgaccatacgcactgcctatgacggtgccgcccccgttgaaattgaa
cagctggtgtcaaaaccgattgaagaagccgttggtgtggttaaaggcttacgcaaaatt
agctcaatttctcgttcaggcatgtctgatgtggtgctcgagtttgagtggggcaccaat
atggacatggcaagccttgaagtacgcgaaaaaatcgacaccattgagctgccattagac
ataaacaaaccattactattgcgttttaaccccaatcttgatcccatcatgcgcttagca
ttttcagtgcccaatgcagatgcggagcagttaaagcaaatgcgtacctttgcagatgaa
gagttaaaacgccgcttagaagccttgtctggtgttgccgcagtgaggctctctggaggg
ttagagcaagaagttcacattgaattaaatcaacaaagattaagccagctcaatcttaat
gctgaccacattaaacgccgaattaacgaagaaaacattaacctttctgcgggtaaagtg
atccagggcgataaagaatatttggtcagaaccttaaatcaattcaattcattagaggaa
ttaggtcaagtcattgtctatcgaaatggccaaaccttagttagattgtctgatattgcg
gtgatcagcgatgcctataaagaacgcagtgatattacccgtattggcgaagttgaatcg
attgaactcgctatttataaagaaggtgatgccaataccgttgcagtggcgaacaagctt
cgaaccgaactcgacaaaatgaaccaaacggatgaaagtaatcaattagaaattatttat
gaccaatctgaatttattgaaagtgcagtaaatgaagttacctcagccgcattatttggc
agcttgctggccatgctggttatttacctgtttttacgtgatattattgccaccctcata
atttctatttcgatccccttttcggttatcgccacttttaatatgatgtattttgccgat
atcagcttaaacatcatgtccctaggcggtattgcgttagccattggtttattggtggac
aatgccatcgtggtattagagaacattgaccgttataaatctcaaggcatgagtaaaact
gaggctgccgtcaccggctgtaaagaagtctctggcgccatttttgcttcaaccctgaca
acacttgcggtatttgtgccattagtgtttgtcgacgggatagcaggcgccttatttgcc
gatcaagcgctcaccgtcacctttgccctactcgcctcattatttgttgccttaaccgcc
attcctatgttggcttcacgtcaaggttttaccagcttgccacaaccggttgaagtgacc
gcgatgcctaaaccgaccacccgtaaaggattaatagcctattacttattggcagtgttg
ctgtttccttttaagttactgtttagctatttacccgctggtttgttaaccgcaactatt
gttataagccgtttcgttagtagcgtgtttggcttgctgctaaaacccatttgtgctgga
tttaacgtcctatatcgtatagtggaatcgttctattaccgcgtacttcgccatgccctg
cggcaccaagtgttaaccctagtgatcgctttagtgatgaccttggcttcaagcagtttg
ctgcctaagttaggtgtagaattaattccaccgatgaatcaaggcgaattttatgttgaa
attttactgcctcctggtactgaagtcagtgaaaccgatgccgtattacaacagttagcc
ctagcgattaaagaccgtgacgatgttaaacacgcctatagtcaagcgggtagcggtggc
ttaatgacatcggacaccgccagaggcggtgaaaactggggccgattacaagtggtgtta
gcggatcctttagcctttaatacggttagtcaggtactgcgcaataccgcaagaaatatc
cctgagctagaggctcagattgaacatcctgaattattcagctttaaaaccccacttgaa
attgagttgtcgggctatgatttggttcaacttaaacaaagcgcggaccgactggttaat
gccttgtcagaatcagaccgctttagtgacatcaataccactcttcgtgatggccagcca
gagatcagcattcgctttgatcatgcccgcctagccgcgttaggcatggatgcaccgact
gtcgctaaccgtattgctcaacgagtaggcggcactattgccagccagttcacggtgcgc
gatcgtaaagttgatatattagtccgtagtgaattaagtgaacgcgatcaaatcagcgac
attgaatcgttaatcattaacccaaatagcgcgcagcctattccattaagtgccatcgcc
accattgacttacaaattggtccttcagcaattaatcgtatcagtcaacaacgcgttgcc
atcgtgtcatctaacttggcctacggtgatttaagcgaagccgtgctccaagcccagcag
atactggctaaacagcaattccctagctcaattcaagccaggttcggcggccaaaatgaa
gaaatggaacaatcttttgaatcgttgaaaatagccctcgttttggccattttcttagtg
tacttagtgatggcaagccagtttgaatccttgctacacccgctattaattttgattgca
gtgccgatggccgttgcaggtagcattattggcttatttattaccggcacccatttaagt
gtggtggtgttcattggcctaattatgttggcaggtattgtggtcaataatgcgattgta
ttggtcgaccgtatcaatcaattacgccgagaaggcaaggataagttgagcgccattaat
gaagctgcgcaatctcgcttgcgccctatcatgatgaccacgctcaccaccaccttaggt
ttattgccgatggcaataggtattggcgacggcagtgaggttcgcgcaccgatggccatt
acagtaattttcggcttaagcatgtctactttactcacattattggtgatccctacctta
tatgcgttgtttgaccgtaaacaatatacccaaaatgaccttgagcttaatactgcggag
acgctagcatga
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integrated database retrieval system
