Shewanella psychromarinicola: EGC80_19200
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Entry
EGC80_19200 CDS
T09848
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spsr
Shewanella psychromarinicola
Pathway
spsr03030
DNA replication
spsr03410
Base excision repair
spsr03420
Nucleotide excision repair
spsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGC80_19200 (ligA)
03410 Base excision repair
EGC80_19200 (ligA)
03420 Nucleotide excision repair
EGC80_19200 (ligA)
03430 Mismatch repair
EGC80_19200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsr03032
]
EGC80_19200 (ligA)
03400 DNA repair and recombination proteins [BR:
spsr03400
]
EGC80_19200 (ligA)
Enzymes [BR:
spsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGC80_19200 (ligA)
DNA replication proteins [BR:
spsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGC80_19200 (ligA)
DNA repair and recombination proteins [BR:
spsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGC80_19200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGC80_19200 (ligA)
MMR (mismatch excision repair)
DNA ligase
EGC80_19200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGC80_19200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AZG36776
UniProt:
A0A3N4E8S3
LinkDB
All DBs
Position
complement(4389871..4391883)
Genome browser
AA seq
670 aa
AA seq
DB search
MHAIQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQCKAIDSPTQ
RVGGMALQKFSQITHLKPMLSLDNAFEQVDFAAFNKRIIDKVDSTEYVCEPKLDGLAVSI
TYRLGVLERAATRGDGSVGEDITENVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKAAFEA
LNQRQIGKGDKVFVNPRNAAAGSLRQLDSKITAARALGFYAYALGVVEGESQPMQTSHFG
QLSQLKQWGVPVSSEVKVADSVDKVYAYYADIMARRSALAYEIDGVVIKVNDIAKQLTLG
FVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNA
DEIARLGVKIGDTVIIRRAGDVIPQIVAIVPEKRLDEAQDIIFPDHCPVCQSTVERLEGE
ATARCSGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVEQLIDKELVKTPADLFKLTPST
VTMLDRMAMKSATNIVAAIKEAKTTTLARFLYSLGIREVGEATAANLAQHFADFELICDA
SVEQLLEVADVGEIVAKHIRQFFAQSHNIEVIEQLLNAGITWPVIEKADESQLSLKGQTW
VLTGTLTQLNRNDAKARLQALGAKVAGSVSKNTDCVVAGEAAGSKLAKAEALGVTVIDEQ
GLLDLLNASN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcacgctattcaaactgaaatggatcaactgactcacactattaatcaacataatatt
cgctattacgttgatgatgctccgtcgatacccgatgctgaatacgatagattaattaaa
cgcttaactgagttagagcgtgactatccgcaatgtaaagccatagattcaccgacccaa
cgagtcggtgggatggccttacaaaaattttcccaaattacccaccttaaaccgatgtta
agcctcgacaatgcgtttgagcaagttgattttgcggcatttaacaagcgtattatcgat
aaagtcgatagcactgagtatgtttgcgaacctaaactcgatggtctcgcggtgagtatt
acctatcgtttgggcgttcttgaacgcgcagcaacacgaggtgatggtagtgtgggtgaa
gatattactgaaaatgtgcgcacaattagatccatcccacttaaattacgtggtgaagga
tttccggatttagttgaagttcgtggtgaagtgtttatgcccaaagcggcatttgaggcg
ttaaaccagcgtcaaatcggtaaaggcgacaaagtatttgttaatccgcgtaacgccgcg
gcaggcagtttacgccaattagacagtaaaattaccgctgcacgcgcactaggattttat
gcttatgcattaggcgtggtggaaggtgaatcacaaccgatgcaaacaagccattttggc
cagttgtctcaattaaaacaatggggcgtcccggtcagcagtgaagtaaaagtggctgat
tcagtcgataaagtatacgcgtattatgctgatattatggccaggcgcagtgcgcttgcc
tatgaaattgatggtgtggtgattaaggtcaatgacattgctaagcagctgactctgggc
tttgtagccaaagcacctcgatgggccatcgcatacaaattcccagcacaagaagaaatg
accctgttagagtcggttgattttcaggtaggtagaacgggcgctgtcactccggttgcc
cgtctcaaacctgtatttgtcggtggcgtaactgtgtctaatgccaccttgcacaatgct
gatgaaattgcccgtttaggcgttaagattggcgacaccgtgattattcgtcgcgccggt
gatgtgatcccgcaaattgtcgcgattgttccagaaaaacgtctcgatgaggctcaagat
ataatctttcccgatcactgccctgtttgccaaagtactgttgagcgtttagagggcgaa
gccacagcgcgttgcagtggaggattattttgtgaagctcagcgtaaagaggccattaaa
cattttgcctcccgtaaagcattaaatattgacggcatgggtgacaaaattgtcgaacaa
ctgatcgataaagaattggttaaaacccctgcagacttatttaagctaacgccttcgact
gtcactatgttagatcgcatggcaatgaagtcagcgactaatattgtcgctgctattaaa
gaggctaaaacgaccacgttggcgcgttttttatatagtttaggcattcgtgaagttggc
gaggctactgctgccaacttagcacaacactttgccgattttgagctgatctgcgatgcc
agtgtcgagcaattacttgaagtggcagatgtgggtgaaattgtggcaaaacatatccgt
caattttttgctcagtcccataacattgaagtgattgagcagctgcttaacgccggaatt
acttggcctgtaatagaaaaagctgatgagtcgcaattgagcctaaaaggtcaaacttgg
gtgttaaccggtacattgacgcaacttaatcgcaatgacgccaaagcacgcttacaggca
ttaggggcaaaagtagccggcagtgtatctaaaaataccgattgtgttgtcgcgggtgag
gctgctggctctaagctcgcaaaagcagaggcgttgggtgttactgtgatagatgaacaa
ggtttgctggatttactgaatgcatccaactaa
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