Streptococcus pseudoporcinus: NCTC13786_01974
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Entry
NCTC13786_01974 CDS
T07156
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spsu
Streptococcus pseudoporcinus
Pathway
spsu03030
DNA replication
spsu03410
Base excision repair
spsu03420
Nucleotide excision repair
spsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13786_01974 (ligA)
03410 Base excision repair
NCTC13786_01974 (ligA)
03420 Nucleotide excision repair
NCTC13786_01974 (ligA)
03430 Mismatch repair
NCTC13786_01974 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsu03032
]
NCTC13786_01974 (ligA)
03400 DNA repair and recombination proteins [BR:
spsu03400
]
NCTC13786_01974 (ligA)
Enzymes [BR:
spsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC13786_01974 (ligA)
DNA replication proteins [BR:
spsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13786_01974 (ligA)
DNA repair and recombination proteins [BR:
spsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC13786_01974 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13786_01974 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC13786_01974 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC13786_01974 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
BRCT_2
RTT107_BRCT_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
VEF94589
LinkDB
All DBs
Position
1:1997572..1999530
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQKDSPTQGVG
GLILSGFEKYQHPYPLYSLQDAFSQEELFAFDRRVKLEFPTVTYVAELKIDGLSISLDYK
EGKLVTGATRGNGSVGENITENIKKIKDIPQTLKDPIDITVRGEAYMSKHSFQMINIERQ
ESGEAEFANPRNAAAGTLRQLDTSIVSKRNLASFLYQEASPSQEITQVAVLDKLSHLGFS
VNKHRMVSSSMEDIWQFIQEIEPDRAQLPYDIDGIVIKVDDLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTIGRTGVVTPTANLRPVQLAGTTVSRATLHNVDYIAQKDIRIG
DTVIVYKAGDIIPAVLRVVTDKRKNQEPILIPNLCPSCQSSLTHLEDEVALRCINPLCPS
LIQRSLEHFASRNAMNIAGLGPAVVEKLFRAQLIHDVADIYKLSREQLLSLEGIKEKSAD
KLLSAIADSKEKSAEKLLFGLGIRHVGEKASRLLLETFGDIETLMQSNEDAIAQIDGLGH
VIANSLAQYFAKPEAQQLISELKCQGLNLTYLGQRVDQSAPLYGLTVVLTGKLEEMGRSE
AKTKLEKLGAKVTSSVSKKTDVVLAGSDSGSKLDKARQLGIRVEDEQWLLDL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagaattattgagttaacaaatctcttgaatcagtatcgacaagaatactat
acaaatgataaccctacagtaagtgatcaagaatatgataaactttatcatgaattgtta
gcattagaaactgaatatcccgaattgattcaaaaagatagcccaacacaaggagttggt
gggcttattttatctggctttgaaaaatatcagcatccttaccccctttatagcttacag
gatgcattttcgcaagaagaattatttgcctttgatcgacgtgttaaattagaattcccg
acagtaacttatgtggccgagcttaagattgatggcttgtctatttccttagattataaa
gagggaaaattggtgactggtgcgacacgggggaacggttctgttggagaaaatatcact
gaaaatattaaaaaaattaaagatattccacaaactttaaaagatcctattgatatcact
gtcaggggtgaggcatatatgtctaaacattcttttcagatgattaacatcgaaagacaa
gaaagcggagaagcagagtttgctaatcctcgaaatgctgcagcagggactcttcgccag
ttagatacctcaattgtgagtaaaagaaatttagcaagttttctctatcaagaagctagt
cctagtcaggaaataacccaagtggccgtattagacaaattgtctcacttgggattttct
gttaataaacaccgtatggtgtcatcttccatggaagacatttggcaatttatccaagaa
attgagccagatcgtgcccaattgccttatgatattgacggtatagtgattaaggtagat
gatcttgccatgcaagaagagttaggttttactgtaaaagcgccacgttgggcaattgct
tataaatttccagctgaggaaaaagaagctgagattttatctgtggattggacaataggt
cgaactggggttgtaacacctaccgctaatctaaggccagttcagcttgcaggaaccaca
gtaagccgtgcgacattgcataatgttgactatatcgctcaaaaagatattcgtatcggt
gataccgttattgtttataaggctggtgatattattccggcggttttacgggttgtaaca
gataaaagaaaaaatcaagaaccgatattaattcctaatctctgcccatcttgtcaaagc
tccttaactcatttggaagatgaagtagccttacgttgtataaatccattgtgccctagc
ttgatacaaagaagtttagaacattttgctagccgaaatgctatgaacattgctggttta
ggacctgcagtagttgaaaaactatttagggctcaattgatacatgatgttgctgatatt
tataaactcagtcgtgagcaattattgtctttagaaggtattaaagagaagtcagctgat
aaattattgtctgctattgctgattctaaagaaaaatcagctgaaaaacttctttttggt
ttgggtattaggcatgttggtgagaaagcaagtcgtttattattggaaacatttggtgat
attgaaaccttgatgcaatctaatgaagacgctattgcccaaatagatggcttgggtcat
gttattgctaattccttagctcaatattttgccaagccagaagctcagcaattgatatct
gagttgaaatgtcaaggtcttaatctaacttatttaggccaaagggtagaccaatctgcg
ccactttacggtctaacggttgttctaactggaaaattagaggagatggggcgtagcgaa
gcaaagaccaaacttgaaaagcttggcgctaaagtaacatctagtgtctctaaaaaaaca
gatgtggttcttgcgggaagtgattctggctctaagttggataaagcaaggcagttaggt
attagggtagaagatgaacaatggttattggatttatag
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