Shewanella psychrophila: Sps_03516 Help Entry Sps_03516         CDS       T05063                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism spsw  Shewanella psychrophila Pathway spsw03030   DNA replication spsw03410   Base excision repair spsw03420   Nucleotide excision repair spsw03430   Mismatch repair Brite KEGG Orthology (KO) [BR:spsw00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Sps_03516    03410 Base excision repair     Sps_03516    03420 Nucleotide excision repair     Sps_03516    03430 Mismatch repair     Sps_03516  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:spsw03032]     Sps_03516    03400 DNA repair and recombination proteins [BR:spsw03400]     Sps_03516 Enzymes [BR:spsw01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Sps_03516 DNA replication proteins [BR:spsw03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Sps_03516 DNA repair and recombination proteins [BR:spsw03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Sps_03516    NER (nucleotide excision repair)     GGR (global genome repair) factors      Sps_03516    MMR (mismatch excision repair)     DNA ligase      Sps_03516   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Sps_03516 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia PTCB-BRCT Motif Other DBs NCBI-ProteinID:  AQS38643 UniProt:  A0A1S6HSZ3 LinkDB All DBs Position complement(4028338..4030386) Genome browser AA seq 682 aa AA seqDB search MQNDKMQDDTPLNTQAVAQEIAELTDTLNGHNYRYYVDDAPSIPDAEYDRLLKQLAVLET DHPEYCFPDSPTQRVGGVPLAKFNQIAHLKPMLSLDNVFNDEEFEAFYNRIHDKTATAPT FCCEPKLDGLAVSILYRDGVYERAATRGDGKTGEDITENVRTIRSIPMKLRGDNFPPLLE VRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGFYAYALGV VEPETWELADHHYGQLMQLKSWGFPVSAEVKQCASVSEVIAYYTDIMVRRSALAYEIDGV VIKVDDITQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIF VGGVTVSNATLHNADEIARLGVKIKDTVIVRRAGDVIPQIVAIVAEKRPDDASEIEFPKT CPVCDSLVERIEGEAVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKEL VESPADLFKLSASAITMLDRMGLKSATNLVAAIEVAKQTSFARFLYGLGIREVGEATAAN LANYFKSLDKLKGANAEEFIKVDDVGTIVAQHLTHFFAQPHNLEVVDKLIEAGVNWPAIE EVAEEALSLKGQTWVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKL TKAQDLGIKILDEEGLLAVLGG NT seq 2049 nt NT seq  +upstreamnt  +downstreamnt atgcaaaatgacaagatgcaagatgatactccactaaatactcaagctgtcgctcaagag atagccgagcttaccgatacccttaacggccataattatcgttattatgtggatgatgct cccagtattccggatgctgaatatgatcgcctgcttaaacagttagcagtgctggaaact gatcatcctgaatactgttttccggattcaccgacccaaagagtgggtggtgtgcccctg gctaagtttaatcagatagcacatcttaaacctatgctcagtctggataatgtctttaac gatgaagaatttgaagccttctataatcgaattcatgacaaaaccgcaactgcgccgaca ttttgctgcgagcccaaactcgatggtttggctgtgagtattttatatcgtgacggtgtg tatgagcgtgcagcgacacggggcgacggtaaaactggtgaagacatcactgagaatgtg cgaaccatacgctctattccaatgaagctacgcggcgataactttccgccactattggaa gtgcgcggtgaagtgatcatgcccaagcaagcgttcgactcactcaatgagcgagccaga gccaagggcgagaaagagttcgttaatccacgtaacgcagcagcgggcagcttgcgccaa ttagacagtaagatcaccgccagcagagcgctgggtttctatgcctatgccttaggtgtg gtagaacctgaaacctgggaattggccgatcatcattatggtcagttgatgcaacttaaa tcttggggctttcctgtgagcgccgaggtgaagcaatgtgctagcgtcagcgaggttatc gcttattacaccgatatcatggttcgtcgcagtgcattggcctatgaaatcgatggcgta gtgattaaggtcgacgatattactcagcaactcaagctaggttttgttgctaaagcacca agatgggcaacagcctttaagtttccggcacaagaggagatgaccttactcgaaggggtc gacttccaagttggtcgtactggcgccgtgacacctgtagccagattgaagccaatcttt gtcggtggagtcactgtatcgaatgcgacgttacataacgccgatgagatcgccagactg ggcgttaaaattaaagataccgtgatcgttcgccgcgccggcgatgtgatcccgcagatc gtagctatcgtggccgagaaacgccccgatgatgccagtgagattgaatttcccaaaaca tgccccgtgtgtgacagtttagtcgagcgcatcgaaggtgaggcggttgcccgttgtact ggtggactgttttgcgaagctcagcgtaaagaagccatcaagcattttgcttctcgtaaa gccttagatatcgatggtatgggagacaaggttgtcgagcagcttatcgataaggagtta gtagagagtccagccgatctgtttaagctatcggcttcggcaatcaccatgctcgataga atggggcttaaatcggcgactaatttagttgccgccatcgaagtcgccaagcaaactagc tttgctcggttcctctacgggctgggaataagagaagtaggtgaagctactgcggctaac ttagctaattactttaagagcttagataagcttaaaggggcgaatgcagaggagtttatc aaggtcgatgatgtcggtactatcgtggctcagcatttaactcacttcttcgcgcaacct cataatctagaggtcgttgataagcttatcgaagctggggtgaactggcccgctatcgaa gaagtagcggaagaggcgttatcgctgaagggacagacttgggtgttgactggcactttg acgcaactgaatcgtaacgatgctaaggctcaattgcaggcgttgggcgctaaggttgcg gggagtgtgtctaaaaatactgactgtttagtagcaggtgaagcggctggttctaaactg actaaggcgcaggacttaggtatcaagatactggacgaggaaggcttgcttgccgtgctt ggtggataa

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