Sporosarcina psychrophila: AZE41_03275
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Entry
AZE41_03275 CDS
T04327
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spsy
Sporosarcina psychrophila
Pathway
spsy03030
DNA replication
spsy03410
Base excision repair
spsy03420
Nucleotide excision repair
spsy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AZE41_03275 (ligA)
03410 Base excision repair
AZE41_03275 (ligA)
03420 Nucleotide excision repair
AZE41_03275 (ligA)
03430 Mismatch repair
AZE41_03275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spsy03032
]
AZE41_03275 (ligA)
03400 DNA repair and recombination proteins [BR:
spsy03400
]
AZE41_03275 (ligA)
Enzymes [BR:
spsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AZE41_03275 (ligA)
DNA replication proteins [BR:
spsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AZE41_03275 (ligA)
DNA repair and recombination proteins [BR:
spsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AZE41_03275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AZE41_03275 (ligA)
MMR (mismatch excision repair)
DNA ligase
AZE41_03275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AZE41_03275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AMQ05057
LinkDB
All DBs
Position
693547..695559
Genome browser
AA seq
670 aa
AA seq
DB search
MDRLELEKRVEELNNLLHQYGHAYYSLDKPLTSDAIYDQYMQELLSIEAENPDLIYPDSP
SQRVGGEILKGFGKVVHEFPMLSLSNAFNEEDLREFDRRVKAAAGHDVSYICELKIDGLA
ISLRYVDGKFVQGSTRGDGTVGEDITASLKTIRTIPLRLKESVAIEVRGEAYMPKQSFVK
LNAMRDEAGDEPFANPRNAAAGSLRQLDPKIAASRNLAIFVYGIGGDGSLFGQDSHSDSL
DYLAALGFETNKERKRCATIEEVIDYVGEWGESRSALDYEIDGIVVKVDNFEDQEQLGFT
AKSPKWATAYKFPAEEVVTTLLDIELSVGRTGVVTPTAILQPVLVAGSTVGRASLHNEDL
IKEKDVRIGDTVIIRKAGDIIPEVVAAIVEKRTGDEVPFEMPTNCPVCDSELVRIEEEVA
IRCVNPQCPAQMKEAIIHFVSRNAMNIEGIGERVVDLLYKADLVHDVSDLYTLTREQLIE
LERMGEKSVSNLLTAIEASKENSLEKMLFGLGIRHVGEKAAAILAEEFGTLADLMVADAE
RLVTIHEIGDKVADSITTYFSNEKVLEVLRKLEAYGLNTAYKGRRRQDVPTDGLFSGKTV
VLTGKLSILTRGEAKEKIEAFGGKVSGSVSKKTDLVIAGEDAGSKLAKAEELEITVWNEA
ELIEALGEKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcgacttgaactcgaaaaacgggtggaagaattgaataacctgcttcatcagtat
ggtcatgcttattattcgcttgataaaccgcttacttccgacgcaatctatgaccaatat
atgcaggaactgttgtcgattgaagcggaaaatcctgacctcatttatccggactccccc
tcacagcgtgtaggtggagagatactgaagggatttggaaaagtcgttcacgagtttccg
atgcttagtctatcgaatgcattcaatgaagaagatttgagagaatttgacaggcgtgtt
aaggcggcagcaggacacgatgtttcgtatatttgtgaactaaaaatagatgggcttgct
atttcgctcagatatgtcgacggaaagtttgtacagggctcaactcgtggagatggtacg
gtcggggaagatataacggcaagtttaaaaacaatccggacaatcccacttcgactgaaa
gaatctgttgcgattgaagttcgcggcgaggcttatatgccgaagcaatcgttcgtgaaa
ttgaatgcaatgcgcgacgaagccggcgatgagccgttcgccaatccacgtaacgcggcg
gcaggctcacttcgccaactcgatccaaaaatagcggcgagccgaaatttggcgatattc
gtttatggaatcggtggcgatggaagtttattcggacaagatagtcattcagactcacta
gattaccttgctgcgcttggctttgaaacgaacaaagaacgcaagcgatgcgccacaatt
gaagaagtgattgactatgttggggagtggggggaaagccgttccgctcttgactatgaa
atcgacgggattgttgtaaaagtcgataactttgaggatcaggaacagcttggatttacg
gcgaaaagtccgaaatgggcgactgcttacaagtttcccgctgaggaagtcgtcacaacg
ttgctagatatagagcttagtgttggcagaacaggtgtagtgactccaacagctatactt
caaccagttcttgtcgcgggatcgactgtaggacgcgcatcgttgcataatgaggatctc
attaaagaaaaagacgttcgaatcggcgacacagttattatccgaaaagcaggagatatt
attccggaggtagtcgctgcaattgtggaaaaacgcactggcgatgaagtaccttttgaa
atgccaacgaactgtcctgtctgtgattcagaactcgttcgaatcgaggaagaagttgcg
atacgttgtgttaatccacaatgtccagcacagatgaaagaagccattattcacttcgtg
tcccgcaatgcaatgaatatcgaaggaattggtgaacgggtagttgaccttttgtacaag
gcagatcttgtccacgacgtctcggatctatatacgctgacaagagagcaattaattgaa
ctcgaacggatgggtgaaaaatccgtctcgaatctactaactgcaattgaagcatcaaaa
gaaaattcacttgaaaaaatgctctttggactaggtatccgccatgtaggtgaaaaagcg
gcagcaatacttgcggaggagttcggaacacttgctgatctaatggtagccgatgcagag
cggcttgtaaccatccacgaaatcggggacaaggtagccgattcaattacgacctatttt
agcaatgaaaaagttcttgaagtgcttcgaaagctggaggcttacggattgaatacagcc
tataaaggacgcaggcggcaagatgtaccgacagacggcctattttctggcaagactgtt
gtcctaacagggaaactatccattttgacccgtggcgaagcgaaagagaaaatcgaagca
ttcggcggaaaagtgagtggtagcgtgagtaaaaagacagatcttgtgattgcaggggaa
gacgccggctcgaaattggcaaaagccgaggagcttgaaattactgtgtggaatgaagct
gagttgattgaagcacttggcgaaaaggagtaa
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integrated database retrieval system
