Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150: SPA3591
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Entry
SPA3591 CDS
T00219
Symbol
yicF
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spt
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Pathway
spt03030
DNA replication
spt03410
Base excision repair
spt03420
Nucleotide excision repair
spt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPA3591 (yicF)
03410 Base excision repair
SPA3591 (yicF)
03420 Nucleotide excision repair
SPA3591 (yicF)
03430 Mismatch repair
SPA3591 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spt03032
]
SPA3591 (yicF)
03400 DNA repair and recombination proteins [BR:
spt03400
]
SPA3591 (yicF)
Enzymes [BR:
spt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPA3591 (yicF)
DNA replication proteins [BR:
spt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPA3591 (yicF)
DNA repair and recombination proteins [BR:
spt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPA3591 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPA3591 (yicF)
MMR (mismatch excision repair)
DNA ligase
SPA3591 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPA3591 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AAV79392
UniProt:
Q5PC41
A0A735JVQ1
LinkDB
All DBs
Position
complement(3719815..3721500)
Genome browser
AA seq
561 aa
AA seq
DB search
MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEITRLQQQLADWNDIYWKQGVSAVDDSV
YDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVRKLADRQAVEQWVRGRSEL
WVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQG
EIFLQREGHIQQRMGGMNARSKAAGMLMRQDNASALNSLGIFIWAWPDGPANMPERLSQL
AKAGFSLTKKYSLAVKDASEVERARQSWLTSALPFVTDGVVIRMAKEPASQYWRPGQGDW
LAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKRWEAWDI
APGDQILVSLAGQGIPRLDEVVWRSRERSKPVPPGSHFNSLTCFYASATCQEQFISRLVW
LGSRSALGLDGMGEASWRALHQTHRFEHIFSWLALTSAQIANTPGVAKGKSEQIWRQFYL
ARRQSFTRWIMAMDIPLTQAALQASGDRSWEQLLMRTEQHWRQLPATGERRAGRVIDWRN
NPQINALSRWLAAQHIPGFGS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagattatggaaaagtatggcgtggggaattttattgtggcattcgcagagtggggcg
ctttgcccggcctggccgccagcaagggccgctgaagaaatcacccgtttacagcaacag
ctcgctgactggaatgacatctactggaaacaaggtgttagcgcggttgacgatagtgtg
tacgaccaactcagcgcaaggctggttcagtggcaacgctgtgttggtcaggatgtttca
tctactccggtttcaccgccgttaaacggtacaacaatgcaccctgttgcgcacacgggc
gtacgtaaactcgcggaccgacaggcggtagaacagtgggtgcgcgggcgcagcgagctt
tgggtacagccaaaagtggatggcgtagcggtaacgctggtttatcaaaacggtaaactg
accagggccattagccggggtaacggactacaaggcgaggactggacgccaaaaattcgc
ctgatcccctctataccgcagacaacacaaggcgcgctagctaacgcggtgttgcagggc
gaaatctttctacagcgcgagggacatatccagcaacggatgggcgggatgaatgcgcgc
tcgaaagccgcaggaatgttaatgcgccaggataacgcctccgcgctaaattcgttgggt
atttttatttgggcgtggccggacggtccggcaaatatgcccgaaagattaagccaactt
gctaaggctggattcagtctgacgaagaaatattctctggcggtaaaagatgccagcgag
gtcgagcgggcgcgccagtcatggctgacgtcagcattaccctttgtgacggatggcgta
gtgatacgcatggctaaagaacccgcgtcacaatactggcgacccgggcagggcgactgg
ctggcagcatggaaatatccgccagtagcgcaggtcgcgcaagtgagcgctattcagttc
tcggtggggaaaagcggcaaaattaccgtagtagcgtcgcttgtccccgttatattggat
gataagcgggttcagcgggtcaatatcggttctgtgaagcgttgggaagcgtgggatatt
gcgccgggcgatcagatcctggtgagtctggccgggcaaggcattcctcggcttgatgag
gtcgtctggcggagtcgtgagcggagtaagcctgtgccgccaggtagccatttcaactcg
ctgacctgcttttacgcgtcggcaacgtgtcaggaacagtttatctccaggctggtatgg
ctggggtcacggtcggcgttgggtctggacggaatgggtgaagctagctggcgggctttg
catcagacgcatcgctttgagcatatcttctcctggcttgccctgacgtcagcgcaaata
gccaacacgccaggcgttgctaaaggaaaaagcgagcagatatggcggcaattttacctg
gcgcgccggcagtcatttacccgctggatcatggcgatggatatccccttaacgcaggcc
gcattacaggccagcggcgatcgctcatgggagcagttattaatgcgaacagagcaacac
tggcggcaattgccagcgacgggcgagcgccgtgccgggagagttatcgactggcggaat
aatccgcagatcaacgcgctgagcagatggctggctgctcagcatattcccggatttggg
tcttag
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