Semicossyphus pulcher (California sheephead): 138588214
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Entry
138588214 CDS
T10596
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138588214 (slit1a)
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Axon guidance molecules
138588214 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRR_1
LRRCT
LRR_9
hEGF
EGF_TEN
LRR_14
EGF_Teneurin
LRR_EndoS
EGF_DL_JAG
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
138588214
NCBI-ProteinID:
XP_069514265
LinkDB
All DBs
Position
Unknown
AA seq
1548 aa
AA seq
DB search
MPVRGGCFGAGMGRLAGQPLWMWVVMLSALLMGNASACPALCTCSGTTVDCHGLGLKTMP
RNIPRNTERLELNGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKELERLRL
NRNQLQQLPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGA
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTI
GLFTQCTTPPELRGLNVAEVQKHEFSCSGHQDSSNLQPCSIGGGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDSMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGL
RSLNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYFIPGTEDTRLNNACNSDPVCPPKCRCESNVVDCSNLKLTKVPE
HIPASTSELRLNNNDITTLEATGVFKSLSQLKKINLSNNKITEIEDGAFEGASSVNELHL
TANQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNQLTTITPGA
FDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSKKIVTGNPRCQRPGFLKEIPLQDVALPD
FRCEEGQEESSCVPRPQCPSECTCLETVVRCSNKHLHALPKGIPRNVTELYLDGNQFSVV
PKDLSAFKYLQLVDLSNNKINSLTNSSFSNMSQLTTLILSYNSLRCIPKMAFGGLHSLRL
LSLHGNEISELPDGIFNDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGP
HGLEGKLLLTTPAKKFECTGDVDTAVLAKCNPCLSSPCQNHGICHSDLMEIYRCSCPPGF
KGKNCETALNACVCNPCANGGTCQVNEDDEAEYSCTCPLGFEGPTCQTNIEDCEDNDCEN
GATCIDGINNYTCFCPPYYTGEMCEEMEDVCAPGRSPCQHQSTCLITSTGPKCVCAPGYV
GDDCSLDYNDCEEHRCQNGAQCLDELNGYSCICPEGYSGQLCEVPASPLSLCELADCQNN
APCVERGGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAED
NGILLYNGDNDHIAVELFQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMVN
LSIDGGLPTTMDSFGAVRPLNREAPLYVGGRGPLQNTPPSSAGMPVDVHSGAFRLWQIQN
GSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGAQGPVCHCQP
GWSGPHCDQPASNPCQGSKCVHGKCIPLDPESYRCECVEGYRGALCNQQGELFNPCRRLN
CKHGRCQISDTGDAYCHCESGYTGELCDAESECRGEPVRDFYQVQRGYAICQTTRTVSWV
ECTGVCDSGACCASQRMKRRKYTFECSDGTSFSEEVEKTIKCGCVGCM
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttagaggaggctgttttggggcaggcatgggcaggctggccgggcagccgctc
tggatgtgggtggtgatgctctctgctctgctcatgggcaacgccagtgcctgccctgcc
ctgtgtacctgcagcggcaccacagtggactgccatggactgggtctcaaaaccatgcca
aggaatatcccccgcaacactgaacgactggagctgaatgggaataacctcacacgcatc
accaagagtgacttcgctggactcaagtacatccgagttctgcagctgatggagaatcag
attactgtgatcgagcgcggggcttttgatgacatgaaggagctggagagactgcggctg
aaccgtaatcaactgcagcagcttcctgagttgctgtttcagaagaaccctgccctgtct
cgactagatctgagcgagaacttcatccagtccatccccagaaaagctttcagaggagct
acagacatcaaaaaccttcagctggataaaaaccacatcagctgcatcgaggacggagca
ttcagagcgctgagaggcctggaagtgctaacgctgaacaacaacaacatcagcagcatc
cccgtctccagcttcaaccacatgcccaaacttcgaaccttccgtcttcactccaacaat
ctgaactgtgactgtcacctggcctggttggctcagtggctcaggcagaggccgacaatt
ggcctgtttacacagtgcacaacccctcccgagctcagaggactcaacgtggccgaggtg
cagaaacatgaattcagctgctcaggtcatcaggactcttccaacctgcagccgtgcagc
atcggaggaggctcctgtcctgccatgtgcacctgcagtaacaacatcgtggactgcaga
gggaaaggtctcactgccatcccagcaaacctgcccgacagcatggccgagatacgtctg
gagcagaatgggattaagtccgttcctcccggagccttctctccctacaagaagctgcgt
aggatagacctgagcaacaaccagatctccgagatcgctcccgatgccttccagggcctg
cgctccctcaactcgctcgtgctgtatggaaataagatcaccgacctgcccaagggggtg
tttgacggcctctacgccctgcaactgctgttgctgaatgccaacaagattcactgcgtt
cgtgccaacgccttccaggacctgcagaatctctcgctgctatcgctctatgacaacaag
atccaaaccctcgccaaaggcaccttcacttcactacgagcgatacagaccctccacttg
gcccagaacccatttatctgtgactgtaatctgaagtggctggccgactacctgcgctcc
aaccccatcgagaccagcggcgcccgctgcgccagccctcgccgactcgcaaacaaacgt
attggacagatcaagagcaagaagttccgctgctccgccaaagagcagtacttcatccca
ggtaccgaggacacccgtctgaataacgcctgcaacagcgatccagtgtgtcctcccaag
tgtcgctgcgagtccaatgtagtcgactgctccaacctgaagctcaccaaggtccccgag
cacatccctgcatccaccagtgaactccgccttaacaacaacgacatcaccaccctggag
gcaactggagtttttaagagcctctcccagctgaagaaaataaacctcagcaacaacaag
atcacagagatcgaagatggcgcatttgaaggtgcttcatctgtcaatgagctccacctc
acagccaatcagatcgactcggtccgaagcgggatgttccgtggcctggagggactgcgc
atgctgatgctgaggaacaacaagatcagctgtgtgcacaacgacagcttcacagggctg
cacaacgtccgtctgctgtctctgtacgacaaccagctgaccaccatcactcccggagcc
ttcgacaccctgcagactctctccacccttaacctcttggccaactcctttaactgcgac
tgccggctggcctggctcggtgattggctgaggagcaagaagatagtgacaggtaaccct
cgctgtcagcgtccgggcttcctgaaggagatcccgctgcaggatgtggctctgcctgac
ttccgctgtgaggaaggccaagaggagtcaagctgcgtgcccaggccccagtgtcccagc
gagtgcacttgcctggagaccgtggtgcgctgcagcaacaagcacctccacgcactgccc
aaaggcatccccaggaacgtgactgaactgtatctggatgggaaccagttcagcgttgtg
ccaaaggacctgtctgccttcaagtacctgcagctggtagacctgagcaacaacaagatc
aactctttgaccaactcttccttctccaacatgagccagctcaccactctaatcctgagc
tacaactcgctgcgctgtatccccaaaatggccttcggtggactgcactcgctcaggctt
ctgtctctccatggcaacgaaatctccgagcttcctgacggcatctttaatgacgtggcc
tcactttcccacttggcgattggtgccaacccgttgtactgcgactgtcgcctgcgctgg
ctctctgactgggtgaagaccggctacaaggagccaggcatcgcccgctgtgccggccca
cacggcctggagggcaagctgctgcttaccacacctgccaagaagtttgaatgcacagga
gatgtggacaccgcagtgctggccaagtgtaacccctgtctgtccagcccctgtcagaac
cacggcatctgtcacagcgacctgatggagatctacaggtgcagctgtcctccaggattc
aagggaaagaactgtgagacagctctgaacgcctgcgtgtgtaacccgtgtgccaacgga
ggaacctgccaagtcaatgaagatgatgaggcagaatacagttgcacatgtccgctgggc
tttgagggccctacttgccaaaccaacattgaagactgtgaagacaacgactgcgagaac
ggagcgacctgcatcgacggaatcaataactacacctgtttttgtcccccctactacaca
ggggagatgtgcgaagaaatggaggatgtgtgcgcccccggacggagcccctgccaacat
cagtctacctgcctcatcacctccactggacccaagtgtgtgtgcgctcctggttacgtt
ggtgatgactgcagtttagactacaatgactgtgaggagcatcgctgtcagaacggagct
cagtgtttggatgagctgaatggatactcgtgcatctgtcctgaaggatacagtggtcag
ctttgtgaggttcccgcctctcccctgtccctgtgtgagctggccgactgccagaacaac
gccccctgtgtggagcgagggggtcgcgccctctgtcagtgtcctccagagtttgggggg
ccacgctgcgagaagctggtcagcgtcaactttgtggacagagactcgtacctgctgctc
tccgacctcaagaactggcctcaagctaacatcaccctgcaggtgtcaacagctgaggac
aatggtatcctgctgtacaatggagacaatgatcatattgctgtggagctcttccaaggt
catgtcaaggtcagctatgaccccggcagccagccaggacatgccatctacagcactgag
acgatcaacgatggccagttccacacagtggagctggtgacctttgaccagatggtgaac
ctgtccatcgacgggggtctccctaccacaatggacagcttcggggcggtgcggcccctc
aacagggaggctccactatacgtggggggtaggggccctctccagaacacacctccctcc
tctgcaggtatgccggtggacgtacactcaggtgctttccgtctctggcagatccagaac
ggttccagtttccacggttgcatccagaacctttacatcaacaacgagctccaggacttc
accaagacgcagatgaagcccggcgtggtaccgggctgcgagccctgcaagaagatctac
tgtgtgcatggcatctgccagcctgatggggcccagggacctgtgtgccactgccagcca
ggctggagcgggccgcactgtgaccagcctgcttccaacccctgccagggcagcaagtgt
gtccatggaaagtgcatcccactggaccctgagtcgtaccgctgcgagtgtgtggagggt
taccgcggtgccctgtgtaaccaacagggggagctgttcaacccctgccgccgcctgaac
tgcaaacatggccgctgccagatctcagacacaggagatgcttactgtcactgtgaaagt
ggctacactggggaactttgtgatgcagagtctgagtgtcgaggggagcccgtgcgagac
ttctaccaggtacagcgaggctacgccatctgccagacgacacgcacggtctcctgggtg
gagtgcaccggagtgtgcgactcgggggcctgctgcgccagccagcggatgaagcgccgg
aaatacaccttcgaatgcagcgatgggacttcctttagcgaggaagtggaaaagaccatc
aagtgcggctgcgtgggctgcatgtag
DBGET
integrated database retrieval system
