| Entry |
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| Symbol |
smchd1
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| Name |
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
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| KO |
| K23113 | structural maintenance of chromosomes flexible hinge domain-containing protein 1 |
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| Organism |
spul Semicossyphus pulcher (California sheephead)
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| Brite |
Chromosome and associated proteins [BR:spul03036]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
138595905 (smchd1)
DNA repair and recombination proteins [BR:spul03400]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
138595905 (smchd1)
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| SSDB |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
2003 aa
MFNARDQRLAASSRGEKTSLKRICVYDCRLENDTTDSWITGSDYSDFLRDLQKKFSIRPH
EAFVLVTTDRTVLDFAKFEELPDGSTLHLLQRADQALPVATKEHIKFLPHFKTLTESGLY
EYYASEGQNPLSYALAELIDNALSANAKNTGVRTIEIRMMFDETLGKPAIIVLDNGCGMT
SKQLNNWAVYRLSKFARENSTFASEQEGYVRPAPVPRSLNSDVSYFGVGGKQAVFFIGDS
VRMISKPIGSPDVHELILSKEDFESKERKKEDIYSTVITNRKPGTFSHVKKPEERFLHNL
IREEIRKDSFTAVVITGVRPEHTAFVKEHFIALTRQLAHIYHYYIHGVSGNIRSSSSNSD
HPPKVDIQVTCREKSPKFPRAINLKEVVDDMQTLYINSAADTFEFKASASGDSGTVEGII
RYHPFLFDKETYPQEPDAVEAPPDDDDDGNDDNESGVGHQARGKRSIFDCFWNGRLIPYD
TGIEFDWCTRPRKKAKLPAECYSRFSGVLFTDDRFKVTTNKLSFVDLEPILKNKDTIFTR
VVNGQKHRGNIQKEFTQWLQNCHDKHDKQIKFIGYKKTITRHELPKKMQHPWDTFSSIQW
DRKVYKAGQLVKTQKTGNNLYGTVVQFLLYGNTEKTKGSVFATGGEVELALEPKALHDKN
KIIPISKIDKTASDEAIRNQVHNDSAKLPDKLTVNWPEGIPWPQNAVRPAGTPLGPLKIE
ILNMNGESVSRLPSVDRGPGKPLIVQLKIVLHGPKGVQEVVSFTAHHAAKWGFWFKKIAT
LTQLGKYTLSLNTALNESDATVIGGKELPSFKLNFSIKGQKNHKTTLFIVRDSLSLLMNS
LLLSFTAGSAHRFVMSEVNAHLRVGVQFNIPLQIKDVYDHSAVIPPDLKPVIKCSGLELS
FEKVDTSGASGTFTIRGVKARGKVLNNQQSMTHDLEVTLPGLKEDTQRVRIILLPGSPHS
LHVKPEVNPVENGNPAGFKVEVHDEAGNVTSNPKQTVRCEVAGHPSTVTDISSSGAGLLM
TKPINLKIIEGEPQMLKAKFVMPGRSNVAAVVSEVQVVPSTRVATMELYSSDDENLVLRN
NEKIEWLAGGLLENLFYKLYDEAGREVPLSDEIASRIKVNWTADVNLRDLAQGKLPVVQV
PSKVSEKPFYQVSYQTQNVFFSFHIVPRPDEPKRLRVTLPQHTVKLGETLPGDITLELVD
QYDNLTKTLTSTCVNHMTVEAEGLDKSAITFEWQESSRCALVNGVQFQSGSPGAREICFT
YRSFVESVTVTVAPGVPAQLKLVSGPEQPLQVLNGHGITTPFIVQLFDQWGNPSQDQRVV
VQLKTSPQTLKMVTAVTSQPSDAEGKACFTVNSVSGPKGYYQLVFECPFNEKPIQGPSVN
LTVNPDPKKPVSLPVQYDRSAKFPAGGRFPVFMVTVVSEEGNPMTTFNPAAVSMLLWKGE
LSGMTPPPTATELRCSKPMENERRGCFHFRDKEIPEQVGKYTIQFSLHTDTTKDLFSHQI
TINVEANQPVKLGPVSQPPTPVVSYSRDISKRTLVENMTLMIMDSYGNPAGLGLNGKVVA
SIKIAGDVSNRTLPLFDGNTNSCNVSLVKGKANVPRLTIMENSPGENGGAYILLFKPEVP
MVRLAPFELPFRFYNVENQQNMSELSRTKDKLTAAVAAQKELFNTYEAVLPLLSGRLQDA
IKKEADQREKLNERNMIIAPNVSVPNLERLEAEKTAEAEGIRNTPRRVCSIRDSFRGQQD
VLGMVGRLAFVQDDAAARVISWHIRGDMDCVITKTTAAAQRIYHDTHGRQQVMGLDSVFV
QQGNRPLPHMRNGRPLFDPPGNPVFARNLLIYPQDPESCNIVFTNLLRDTIVIDDLDSAN
NYRRAVVQNRTQCPTILTRQGERVSSNGKFGGLQNKAPPIEKLEVFGAPIPPHYYALMEQ
IELLRQYRALVQKRDKATKDHEEHLKKMTSPETLQKKRDMEEKIKQLEEIERQLASAAVR
PVRRAPEDAGEPSGIAAKRARQT |
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| NT seq |
6012 nt +upstreamnt +downstreamnt
atgtttaatgcgcgcgaccagcgactcgctgcatcctcccggggtgaaaaaacatccctc
aaacggatctgtgtgtatgactgtcgcttggagaatgacactacagacagttggatcact
ggttcggactacagcgactttcttcgagatctgcaaaagaaattttcaatccgtccgcat
gaagcatttgtgttggtgacaactgacagaacagtccttgattttgccaaatttgaggag
cttccggatggcagcacccttcacttgttgcagcgggcggatcaagctctgccagtggca
acgaaggagcacatcaagtttttgcctcattttaagacattgactgagagtggcttgtac
gagtactatgctagtgaaggccagaaccctttgtcatatgccctggctgagctgatcgac
aacgctctctcagccaatgcaaaaaacacaggtgtcaggacaatagagatccgaatgatg
tttgatgaaactcttgggaaacctgctataattgttttagataatgggtgcgggatgacc
tctaagcagctcaataactgggcggtgtacagactctctaaatttgcaagggaaaacagc
acatttgcaagtgagcaagagggctacgttcggcctgctcctgtccctcgaagtctcaac
agtgatgtttcctacttcggagtgggaggaaaacaggctgttttcttcattggagattca
gtcaggatgatcagtaaaccgataggctctccagatgttcatgagctgattctgtcaaaa
gaagactttgagagtaaagagaggaaaaaagaagatatttacagcaccgtcatcacaaac
aggaagcctggtaccttttcacatgtgaaaaaacctgaggagcgcttcctccacaacctc
attcgtgaggaaataaggaaggacagcttcacagctgtggtaatcacaggagttcggcct
gagcatacagcctttgtgaaagaacatttcatagccttgaccagacagctcgctcatata
tatcactattacattcacggagtcagtggaaacataagaagcagctcttcaaactcagat
catcctcctaaagttgacattcaggtcacttgtcgggagaagtcccccaaatttccccga
gcgattaatcttaaggaagttgttgacgacatgcagaccctgtacataaatagtgccgca
gacacgtttgagtttaaggcctctgcttcaggcgacagtggaactgtggagggaatcatt
cgttatcatcccttcctcttcgacaaggagacttaccctcaagaacctgatgctgtggaa
gccccccctgacgatgatgatgacggcaatgatgataatgagtctggagtcgggcatcag
gcaagagggaaacggtcgatattcgactgtttctggaatggacggctcataccttacgac
acaggcattgagtttgattggtgtactcggcccagaaagaaagcaaagttgccagccgag
tgttacagtcggttctcaggggtgcttttcactgacgacagattcaaggtcaccacgaac
aagctttcctttgtggacctggagccgattctgaaaaacaaggacactatcttcacacgc
gttgtcaatggacagaaacacagaggtaacattcagaaggagtttacgcagtggctacaa
aactgtcacgacaagcatgacaagcaaatcaagtttatcggctataagaagaccataaca
cgacatgaattgcccaagaaaatgcagcatccctgggacacgttctcctccatccaatgg
gacagaaaagtctacaaagcaggccagcttgtgaagactcagaaaacggggaacaatctg
tacggtaccgtggtgcagtttttgctgtacggaaataccgaaaaaacaaaaggaagtgtg
ttcgccacaggaggagaggttgaactggctctggaacccaaagcacttcatgacaagaac
aagatcatccccatttccaagatagacaagaccgcctctgatgaagccatccggaaccag
gttcataatgactcagccaagcttccagataaactcacagtgaactggcctgagggtata
ccatggccacagaacgctgtccgtcctgccgggactccattgggaccacttaaaatcgaa
attctgaacatgaacggggaatcggtgtccaggttgccatcagtggaccgaggacccggg
aaaccactgatagttcagctcaaaatagtcctgcatggtcccaaaggagttcaagaggtc
gtctctttcactgcccaccatgcagcaaagtggggtttctggttcaaaaaaatagcgaca
ctgactcagctggggaagtatacactgtctctgaacactgcgttaaacgaaagcgacgct
acggtcattggaggcaaggagctgccgagcttcaaactcaatttcagcatcaaaggtcag
aaaaaccataaaacaacgttatttattgtacgtgattcattatctctgctcatgaactcg
ctgcttttgtccttcacagcgggaagtgctcacagattcgttatgagtgaggtgaacgcc
catcttcgcgtgggagtgcagttcaacattcctctgcagattaaagatgtttatgaccac
tcagctgtgattcctcctgatctcaagcctgtgatcaaatgcagtgggctggagctgagt
ttcgagaaagtggacaccagtggggccagtgggacgtttactatccgaggtgtcaaagca
agaggaaaggttctgaacaaccaacagtcaatgacacacgacctggaagtgaccctgcct
ggcctgaaagaagacacacagagagtcaggatcattcttcttcctggtagtccacattcc
ctccatgtgaaaccagaagtaaacccagtagagaacggaaaccctgccgggttcaaagtt
gaagttcacgatgaggcgggaaacgtcacgtctaacccaaagcagactgttcgctgtgag
gttgccgggcacccttcgacagtgactgacatcagcagctcaggagctggtctgcttatg
actaagcccattaacctgaaaatcatcgagggagaaccacagatgctcaaagctaaattt
gtgatgcctggcaggagcaacgttgcggcggtggtgagtgaagtgcaggtggtgcccagc
acaagagtcgcgacgatggagctctacagctcggatgatgagaatctggtgctgaggaac
aacgaaaagatagagtggctggctggaggtttgctggagaacctgttctataagctgtat
gatgaggccggcagggaggtacctctctctgatgaaatagcctccaggataaaggttaac
tggacagcagatgttaatctgcgagatttggcccaggggaagctgcccgtcgtgcaggtg
cccagtaaggtgtctgaaaagcccttctaccaggtgtcataccagacccagaatgtgttc
ttctcctttcacatcgtgccacgccccgatgaaccgaagcggctcagagtgactctgccc
cagcacacagtgaagctgggtgaaaccctgcctggagacatcaccttggagcttgtggac
cagtacgataatttaacaaagacgctaacctccacctgtgtgaaccacatgactgtcgaa
gctgagggtctggacaaatcagccatcacctttgaatggcaggagagcagcaggtgtgct
ctggttaacggggtgcagttccagtctgggagtcctggcgcccgagagatttgcttcacc
tacaggagctttgtggagtccgtcacggttacagtggcgcctggtgtccctgcacagctt
aagctagtcagtgggcctgagcagcctttgcaggtgttgaacggccacggcatcaccaca
ccattcattgtccaactgtttgaccaatggggcaacccttcccaagaccagagggtcgtg
gtacaacttaagacttcaccccaaacactcaagatggtgacagctgttacctcacagcct
tcggatgcagaagggaaagcctgtttcactgtcaacagtgtgagcggaccgaaggggtac
tatcagctggtttttgaatgtcccttcaacgagaagcccatccagggtccgtcagtgaat
ctcaccgtcaacccagatcccaagaaacccgtgagcctgccggtgcagtacgacaggtct
gccaagtttcctgctggagggagattcccagtgttcatggtgactgtggtgtccgaagaa
ggaaacccgatgacaacttttaaccctgctgctgtgtccatgctgctgtggaagggagag
ctatcaggaatgacgcctccaccaacagccactgagctgaggtgcagtaagcccatggag
aatgaaaggaggggctgttttcacttcagagacaaagagatcccagaacaggttgggaag
tacaccatccagttttctctacacacagacacaacaaaagacctgttcagccatcagatt
accataaacgtggaggccaatcagccggtcaaactgggacccgtctctcagccaccgacc
ccggttgtttcctacagtagagacatttccaaacgaaccttggtggagaacatgactttg
atgataatggattcatatggaaacccagcagggctgggcctgaatgggaaagtggttgct
tctataaagatcgccggtgacgtaagcaacagaaccctccctctgtttgacggcaacacc
aacagctgcaatgttagcttggtaaagggaaaagccaacgtccctaggctgacgatcatg
gagaacagccccggtgagaacggcggggcttacatcctcctcttcaaacccgaagtgccg
atggttcgcctggctccttttgagctcccctttcgtttttacaatgtggagaaccaacag
aacatgtctgagctgtccaggacgaaagataagctgaccgctgctgtggctgcacaaaaa
gagctctttaatacatatgaagcggtccttcctttgctgagcggtagactccaggatgcc
attaaaaaagaggccgaccagagagaaaagctgaatgagagaaacatgataatagcgcca
aatgtttctgtgccaaatcttgagagacttgaagccgagaagactgctgaagctgagggg
atcaggaacacgccaagacgagtctgctccatccgggattccttcagggggcagcaggat
gttttgggaatggttggccgcctggccttcgtgcaggacgatgctgctgcgagggttatc
tcttggcatatcaggggtgacatggattgtgtcatcaccaaaacaacagcagcagcacag
aggatctatcacgacacccatggcaggcagcaggtcatgggcctcgacagtgtgtttgtg
cagcaggggaacagaccgctgccacacatgagaaacggccgcccgctctttgacccccct
gggaaccctgtgttcgccagaaatctcctcatttacccccaagacccagaaagctgtaac
attgtgtttacaaacctcctcagagatactattgtgattgatgacctggactctgcaaac
aactacagaagggcggtggtgcagaataggacacagtgtcccaccatcctgacgaggcag
ggggaaagagtaagctccaacggcaagttcggaggtttacagaacaaagcccctccgata
gaaaaattagaagtgtttggagcccccatcccaccgcattattacgctcttatggaacaa
atagagctgctccgtcagtaccgagcgctggtgcagaagagggataaggcaacaaaggac
catgaagagcatttaaagaagatgacgtcacccgaaaccctgcaaaagaagcgagacatg
gaggaaaaaatcaaacagctcgaggagattgagagacaacttgcttctgcagcagtaaga
ccagtgagaagggctcctgaggatgctggtgagccgtccggcatcgctgcaaagagagcg
agacagacctga |
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