Semicossyphus pulcher (California sheephead): 138603598
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Entry
138603598 CDS
T10596
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
138603598 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spul03400
]
138603598 (lig4)
Enzymes [BR:
spul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138603598 (lig4)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138603598 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138603598
NCBI-ProteinID:
XP_069531567
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MEGASSTDAAAQSSIAAQVPFIHLCNTLEKIQKSKLRPEKSKILGDFIESWRKFHSALHK
DNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLTIKEVNDFLDSVAINNASKKKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQLFHPDANDLYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAIANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLQGSLTPYIHNVFKSNIVNCILDGEMMAYNPTADTFMQKGSKFDIKKLM
DDSELQTCFCVFDVLLVNDKKLGKETLKKRYETMQTVFTPVKGRIHLVPKADARSVQDVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTFCRIGSGYTMKELYDLGLKLAKNWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDDDEPQKKKRKMPAKPKKVVGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTDDHPKAELEKGVARCGGIVVQNAGRDTYCVIAGVENMRVKNLVSSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVATDEQQLRE
VFGRMRNGEASTAVNVGQVEQRYGWEDLPTSLFRPFEVYMDRYADIGDPKTALPATCLDI
RALEFRYHGGKVVQKLEEGVSHVVITEETRLLDLRTLRRCFRKKFKIVRDSWVTDSIKAG
YLMNDTDYSV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcgcttcttcaactgatgctgccgctcagtcctctattgcagctcaggttcct
ttcattcacctgtgtaacactctagagaaaatccagaagtccaaactccgtccagaaaaa
tccaagatccttggggatttcattgagtcatggaggaagtttcattctgccctccacaaa
gacaaccccaaaacaacagactctttctacccagctatgcgcctcatagttcctcccttt
gaacgagagcgtatggcgtatggaatcaaagagagcatgttggctaaactctacatcgac
gttttaggccttccaaagaatggcccagaagccaataaacttttaaactaccgtgctccc
actacatcccaaggagaagctggagactttgccggcatggcgtactttgtgcttaagaaa
cgttgcaccagccaaggaaacctcactatcaaggaagtcaatgactttctggactcagtg
gccatcaacaacgctagcaagaagaaggatctagtgaaaaagagtctgctgcacttaatc
acccagagctcagctcttgagcaaaagtggctcatcagaatgattctgaaggacatgaag
ctcgggatcagcaaggagactgttctccaactcttccacccggatgctaacgacctttac
aatgtcaacactgacttaaacaaggtgtgccagcagctccacaacccctccgtgtcttta
agcgaagtctctatcggactcttctccgctttcaagccgatgttggcagctattgcaaac
atacgcaacgttgagaaacagatgggaaacagccctttttacattgagacaaagttggac
ggggagcgcatacaactgcacaaagacggggatgtttacaagtacttcagccgaaatgcc
tttgagtacacccagcagttcggaggatcccctctgcagggctcacttacaccttacatc
cacaacgtttttaaaagcaatattgtaaactgtatcctcgacggggagatgatggcatac
aacccaaccgcggacaccttcatgcagaaagggagcaagttcgacatcaagaaactcatg
gacgactccgagttgcagacgtgcttctgcgttttcgatgttttgttggtgaatgacaag
aagcttggcaaggagacactgaagaagcgctacgagacaatgcagacagtcttcactcca
gtcaaaggaaggatacacctggttccaaaggctgatgcgagaagcgtgcaggacgttgtg
aacgcgctaaatgacgccattgacaacagggaagaaggaatcatggtgaaggatccttta
tcgatctacaaaccagacaagcgtggggagggatggctgaaaataaagccggaatacgtg
gatggcttgatggatgagctagacctactgattgttggtggctactggggaaaaggtaga
cgaggtggcatgatgtcccatttcttatgtgccgttgctgaagctccaaagcctggcgag
aaaccctcagtcttccacactttttgccgaatcggctctggctacaccatgaaagagctg
tatgacctcggtttaaagctcgccaagaactggaaggtctatcgtaaaaatgacccaccg
gcatctatcttgtgtgggacagagaaaccagaagtttacatcgaaccctgcaactcggtc
atcatccaggtcagggctgctgaaatagttggaagcgatatgtataaaaccaactgtacc
ttacgtttcccaagaatcgagaagatccgcgaagacaaggagtggcaccagtgcatgact
ctggcagagctggatcagttccgcagtaaggcgtctgggaaacttgcctcaaggcatctt
cgcattgatgacgatgaaccgcagaagaagaagcgcaaaatgccagccaaacccaagaag
gtggtcggaattattgaccactttaagccacaggatctgtctggggttaccaaagagacg
gacatgttcgaggatgtggagttctgtatcctgaacggcactgacgatcaccccaaggct
gagctggaaaagggcgtagccaggtgtggaggtatagtggttcaaaacgcaggacgggac
acctactgtgtgattgccggggtggagaacatgcgcgtgaagaacctggtctcgtccgac
cagcatgacgtggtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcagccgcgtcacatgatccacatgtcgccctccaccagggagcacttcgccaaa
gagtacgacagctacggcgacagctactttgtggcgacggacgagcagcagttgcgggag
gtgttcggccggatgaggaacggggaagcgtccacggctgtcaacgtcggccaggtggag
cagcgctacggctgggaggaccttcccaccagcttgttcagacccttcgaggtttacatg
gaccgctacgccgacataggagaccctaaaaccgccttacctgccacctgtttggacatc
agggcgctggagttccgctaccatggaggtaaggtggtgcagaagttagaggaaggagtc
tctcatgtcgttatcacagaagaaacaagacttctggatttgaggactctgaggcgctgc
ttcaggaagaagtttaagattgttagagactcatgggtgactgattccatcaaagcaggg
tatctgatgaacgacactgactactccgtttga
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