Semicossyphus pulcher (California sheephead): 138612456
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Entry
138612456 CDS
T10596
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04115
p53 signaling pathway
spul04145
Phagosome
spul04148
Efferocytosis
spul04350
TGF-beta signaling pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
138612456 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138612456 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
138612456 (thbs1b)
04148 Efferocytosis
138612456 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
138612456 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
138612456 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138612456 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spul04131
]
138612456 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138612456 (thbs1b)
Membrane trafficking [BR:
spul04131
]
Endocytosis
Phagocytosis
Opsonins
138612456 (thbs1b)
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138612456 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
Laminin_G_3
TSP1_ADAMTS
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
138612456
NCBI-ProteinID:
XP_069541816
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELVQVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWQNITLFVQEDRAQLYAGCEEVNNAELDA
PIQSILTLETPASARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSTITTDTM
ILENLNGSSAIRTEYTGHKTKDIQMVCGFSCEDLVSMFKELKSLGVVVKELSGKLRQLTD
ENKLINSRIGIHSGVCIHNGVVHKNREEWTIDDCTECTCQNSATVCRKISCPLMPCSNAT
VPDGECCPTCGTLSDYADGGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCAGEGRQT
EKCQKSPCPINGNWGPWSPWDSCTVTCGGGNQIRKRLCNDPAPKYDGKECIGDAKEGQLC
NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGRGVEQATAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNSDLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDSDDDNDSIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttgctcttgatgctttggacctgcgagagtgccagagtc
gcagagtctcgagatgacaatagcgtgtatgacttgtttgagctcgtccaagtcccgaag
aagaaccacggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccggtccccgagagcgcctttagggacctgatcgattcc
atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaaacgcaccagg
ggaagcctcctgaccgtggagaagcaggacggctccggacccgtgtttgagatcgtttcc
aacggcaaggcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtt
tccatcgaagatgtggatctggctacgggccactggcagaatatcacgctgttcgtgcag
gaggaccgcgcgcagctgtacgcgggatgcgaggaggtgaacaacgccgagctggatgcg
cccatccagagcatcctgacgctggagaccccggccagcgcgcgcctcaggattggcaag
ggagccgtgaaggacaggttcatgggagtcctacaaaacgtgcggttcgtctttggaacc
acactggatgccatcctgcgcaacaaaggatgccaaagcaccatcacgactgacacgatg
atcctggagaacctgaacggctcgtcagccatcaggacagagtacaccggacataagact
aaagacatacagatggtctgtggcttctcctgtgaggacctggtcagcatgtttaaggag
ctgaagagccttggtgtcgtggtcaaggagctgtccggcaaactccgccagctgacggat
gaaaacaagctgatcaacagccgcatcggcattcacagcggcgtctgcatccacaacggc
gtggtgcacaagaacagagaggagtggaccatcgacgactgcaccgagtgcacttgtcag
aactctgctactgtgtgtcgcaagatttcctgccccctgatgccctgctctaatgctacc
gttcctgacggagagtgctgcccgacctgcggaacattgagcgactatgcagatggcggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataacaactgtgagggtacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgcttcaagcaggacggcaactggagtcattgg
tcaccctggtcatcctgctccgtcacctgtggtgctggtgtcatcacccgtatccgcctt
tgtaactcccccacccctcagcttggaggcaaggactgtgcgggagagggccgacagacc
gagaagtgtcagaagtctccatgcccaatcaatggcaactggggaccctggtcaccatgg
gatagctgcaccgtcacctgtggaggtggcaaccagattcgtaaacgcctgtgcaatgac
cctgcaccaaaatacgatggaaaagagtgcatcggtgatgccaaagagggacagttgtgc
aacaaaaaagcctgcccaattgatggatgcctgtcaaacccctgctttgctggagctaag
tgcaccagtttccctgatggttcttggaagtgtggaaagtgtcctgctggctacactggc
aacggtatcaagtgtaaagatgttgatgagtgcaaggaggtcccggatgcttgctttgag
tttaatggcgtgcaccgctgcgaaaacacagatcctggctacaactgtctgccctgccct
cctcgctactcaggaccccagccgttcggtagaggtgtggagcaggctactgctaagaaa
caggtgtgcacgccccgtaatccctgcctggatggtagccatgactgcaacaaaaacgcc
cgctgtaactaccttgggcactttgcagatccaatgtaccgctgtgagtgcaagcccggc
tatgctggcaacggtcacatctgtggagaagacacagatctggatggatggcccaactct
gacttggtttgtgtggagaatgccacttaccactgcaaaaaggacaactgccccaacctc
cctaactctgggcaggaagattacgataaggacggcattggagatgcttgtgacagcgat
gatgacaatgacagcattcctgacgacagggacaactgtccattcgtgtacaacccaagg
cagtatgactacgaccgtgacgatgtgggtgaccgctgtgacaactgcccatacaacagt
aacccagaccagacagacacggacaacaacggagagggagatgcgtgcgctgtggacatc
gatggagatggcatactaaatgagaaggacaactgcccctatgtgtacaatgtcgaccag
agagacacagatctggacggagtgggagacatgtgcgacaactgcccactggaacataat
cctgatcaggttgattcagatgatgaccgtgtgggagacaagtgtgacagcaaccaggac
atcgatgaagatggacaccagaacaacctagacaactgcccgtacatccccaacgccaac
caggccgaccatgataaagatggcaagggagacgcctgtgaccatgatgatgacaacgat
ggtattcctgatgacaaggacaactgcagactggccttcaaccctgaccaactggactct
gatggtgatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgtgcccgac
atctatgacgtgtgtccggagaactttgacattagtgagacagacttccgcaagttccag
atggttcctctggaccccaaaggcacttctcagattgatcctaactgggtcgtccgccat
cagggcaaagagctggttcagactgtcaactgcgaccctggcattgctgttggttaccat
gagttcaattcagtggacttcagtggaaccttcttcatcaacaccgagagggatgacgat
tacgccggctttgtgttcggctaccagtccagctccaggttctatgtagtgatgtggaag
cagattacgcagacgtactggtcgaataaacccaccaaggcgcagggctactctggcctg
tccattaaagtggttaactccaccactggcccaggagagcacctaaggaacgccctctgg
cacacagggaataccccaggacaggtccgcactctctggcacgaccctaagaatgttgga
tggaaagacttcactgcctacagatggcatctgattcacaggccgcgaacaggactcatc
agagttgtgatgtacgagggcaagaagatcatggctgattctggtagcatctatgacaag
acatacgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgtctaa
DBGET
integrated database retrieval system
