KEGG   Streptomyces fodineus: BFF78_13620
Entry
BFF78_13620       CDS       T05140                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
spun  Streptomyces fodineus
Pathway
spun03030  DNA replication
spun03410  Base excision repair
spun03420  Nucleotide excision repair
spun03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BFF78_13620
   03410 Base excision repair
    BFF78_13620
   03420 Nucleotide excision repair
    BFF78_13620
   03430 Mismatch repair
    BFF78_13620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spun03032]
    BFF78_13620
   03400 DNA repair and recombination proteins [BR:spun03400]
    BFF78_13620
Enzymes [BR:spun01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BFF78_13620
DNA replication proteins [BR:spun03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BFF78_13620
DNA repair and recombination proteins [BR:spun03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BFF78_13620
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BFF78_13620
   MMR (mismatch excision repair)
    DNA ligase
     BFF78_13620
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BFF78_13620
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH_5 HHH Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: AOR31951
UniProt: A0A1D7Y8Q8
LinkDB
Position
complement(3358805..3361000)
AA seq 731 aa
MAGDKQQAETAVPAEARDKHAQLAEQIEEHRFRYYVKDAPVISDAEFDKLLKTLEALEEQ
YPELRTPDSPTQKVAGSYATEFTAVEHRQRMLSLDNTFNDEELAAWAERIARELGDQDYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTITEIPDRLGGDKVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGMTRLSQAYDLLKTWGLPTSPHNRVVDDLDGVREFIAHYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGGEREFVMPAECP
ECGTALRPMKEGDIDLRCPNARTCPAQLRERVSYLAGRECLDIEHFGAVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLENIEAAKQRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELATTDGVG
PIIAAALKEWFAEDWHREIVRKWKAAGVPLEDASTGEDVGPRPLAGLTVVVTGTLENFTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFDVLLEQGPE
AAAEVALPTEE
NT seq 2196 nt   +upstreamnt  +downstreamnt
gtggccggcgacaagcagcaggcggagacggcagtgcccgccgaggcacgtgacaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgccgagttcgacaagctcctgaagaccctggaggccctggaggagcag
tatccggagctgcgcaccccggactcgccgacccagaaggtcgcggggtcgtacgcgacg
gagttcaccgcggtcgagcaccgccagcgcatgctgtcgctcgacaacaccttcaacgac
gaggagctggccgcctgggccgagcgcatcgcgcgcgaactcggcgaccaggactaccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctacgagcacggccgg
ctcacgcgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cgtacgatcaccgagatcccggaccgcctggggggcgacaaggtgcccgacctggtcgag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactgaacgaacgcctggtc
gccgccggtgacaagccgttcgccaacccgcgcaacgccgccgccggttcgctgcgccag
aaggacccgcgcgtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcc
ctggagggcttcacgggcatgacccgcctctcccaggcctacgacctgctgaagacctgg
ggcctgcccacctccccgcacaaccgcgtggtcgacgacctcgacggcgtacgcgagttc
atcgcccactacggcgagaaccgccactccgtggagcacgagatcgacggtgtcgtcgtc
aagctggacgagatccgcctccagggccgactcggctccaccgcgcgtgcgccgcgctgg
gcgatcgcctacaagtacgcgccggaagaggtcaacaccaagctcgtcgacatcaaggtg
ggcgtcggccgcaccggccgcgtcacgccgtacgcccaggtcgagccggtcacggtcgcc
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtc
ctcatcggggacacggtcgtcctgcgcaaggccggtgacgtcatcccggagatcctcggc
ccggtggtcgacctcagggacggcggcgagcgggagttcgtgatgccggccgaatgcccc
gagtgcggcacagcgctgcggcccatgaaagagggcgacatcgacctgcgctgccccaac
gcccgtacctgcccggcccagttgcgcgagcgcgtctcctacctcgcgggccgtgagtgc
ctggacatcgagcatttcggcgcggtggccgccgccgcgctcacccgtccgctggagccg
gccgacccgccgctggtggacgagggcgacctgttcgacctgacggtggagaagctgctg
cccatcaaggcctatgtcctcgaccccgacagcggtctgcccaagcgggaccccaagacg
ggcgaggagaaggtcgtcactgtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgccctgctggagaacatcgaggcggccaagcagcgcccgctggcccggttcctgaac
ggcctgtccatccggcatgtcggcccggtcgcggcgcaggccctcgcccgcgagttccgc
tccatcgaccgcatcgaacaggccaccgaggaggagctggcgaccaccgacggcgtcggc
ccgatcatcgccgccgcgctcaaggaatggttcgccgaggactggcaccgcgagatcgtc
cgcaagtggaaggccgccggagttccgctggaggacgcctcgaccggcgaggacgtgggc
ccgcgcccgctggcggggctcacggtcgtcgtcaccggcaccctggagaacttcacccgc
gacggcgccaaggaggcactgcagagccgcggcgcgaaagtgaccggatcggtgtcgaag
aagacgtcgttcgtcgttgtgggtgacaaccccgggtcgaagtacgacaaagccatgcaa
ctgaaggttccggtcctgaacgaggacggtttcgacgtcctcttggagcagggacccgaa
gccgcggccgaagtcgcgcttccgaccgaggagtag

DBGET integrated database retrieval system