Sphingopyxis sp. USTB-05: KEC45_01065
Help
Entry
KEC45_01065 CDS
T10625
Symbol
odhB
Name
(GenBank) 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
KO
K00658
2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:
2.3.1.61
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus00020
Citrate cycle (TCA cycle)
spus00310
Lysine degradation
spus00380
Tryptophan metabolism
spus00785
Lipoic acid metabolism
spus01100
Metabolic pathways
spus01110
Biosynthesis of secondary metabolites
spus01120
Microbial metabolism in diverse environments
spus01200
Carbon metabolism
spus01210
2-Oxocarboxylic acid metabolism
Module
spus_M00009
Citrate cycle (TCA cycle, Krebs cycle)
spus_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
KEC45_01065 (odhB)
09105 Amino acid metabolism
00310 Lysine degradation
KEC45_01065 (odhB)
00380 Tryptophan metabolism
KEC45_01065 (odhB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
KEC45_01065 (odhB)
Enzymes [BR:
spus01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase
KEC45_01065 (odhB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-oxoacid_dh
Biotin_lipoyl
E3_binding
GCV_H
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
USI77545
LinkDB
All DBs
Position
217464..218714
Genome browser
AA seq
416 aa
AA seq
DB search
MSTEVKVPTLGESVTEATIGEWLKKPGEAVALDEPIASLETDKVAVEVPSPVAGVMGQQL
AAVGDTVNVGAAIATIEAGGAAAAPAPAAAAPAPAPAAKAEAAAPAPAATAAPAGESVDT
VTTMSPAVRRLVLEHGVDPTKIQGSGKDGRLTKEDVLAAANNAPAAAPAPAAAAAAPVAS
GTPGRHEERVKMTRMRQTIAKRLKAAQDTAAMLTTFNDVDMSAVMATRDKYRESFEKKHG
VRLGFMSFFTKAVALAAHDIPAVNARIDGDEIVYHDYLDVSVAVSAPNGLVVPVVRNADS
LSFADIEKAIADLGKRAKDGTLTIDDMTGGTFTISNGGVFGGLMSTPIINPPQSAVLGLH
RIEDRPVVRNGEIVIRPMMYLAMSYDHRLIDGREAVTFLKTIKEAIEDPTRLLIDL
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaagtcaaagtccccacgctgggcgaaagcgttaccgaagcgacgatcggc
gaatggctgaaaaagcccggcgaagccgttgcgctcgacgagcccatcgcgagccttgaa
accgacaaggttgcggtcgaggttccctcgcccgttgccggcgtgatgggccagcagctc
gccgcggtcggcgatacggtcaatgtcggcgcggcgatcgcgacgatcgaggccggcggt
gcggccgctgctccggcacctgccgccgccgcgcctgctcccgcaccggctgccaaggcc
gaagctgctgcgcctgcgcctgccgcgaccgcagcacccgccggcgaaagcgtcgacacg
gtcacgaccatgtcgcccgcggttcgccgcctcgtgctcgagcatggcgtcgaccccacg
aagattcagggcagcggcaaggacggccgcctgaccaaggaagatgtgctcgccgccgcg
aacaacgcgcccgctgccgccccggctcccgctgctgccgctgccgcgcctgtcgcaagc
ggcacccccggtcgccacgaagagcgcgtcaagatgacgcgtatgcgccagacgatcgca
aagcgtctgaaggccgcgcaggataccgccgcgatgctgacgacgttcaacgacgtcgac
atgtcggcggtgatggcgacgcgcgacaaatatcgcgaaagcttcgaaaagaagcacggc
gtccgtctgggcttcatgagcttcttcaccaaggcggtcgcgcttgccgcgcatgacatt
ccggcggtcaacgcccgcatcgacggcgacgaaatcgtctatcacgactatctcgacgtg
tcggtcgcggtcagcgcgccgaacggccttgtcgttcccgtcgtgcgcaacgccgacagc
ctgtcgttcgccgacatcgaaaaggcgattgccgaccttggcaagcgtgccaaggacggc
acgctcacgatcgacgacatgaccggcggcaccttcaccatctcgaacggcggcgtgttc
ggcggcctgatgtcgaccccgatcatcaacccgccgcagtcggcggtgctcggcctccac
cgcatcgaggatcgtccggtcgtccgcaatggagagatcgtgatccgtccgatgatgtat
ctcgcgatgagctatgaccaccgcctgatcgacggccgcgaggcagtgaccttcctcaag
acgatcaaggaagcgatcgaggatccgacgcgccttctgatcgatctttga
Sphingopyxis sp. USTB-05: KEC45_01075
Help
Entry
KEC45_01075 CDS
T10625
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus00010
Glycolysis / Gluconeogenesis
spus00020
Citrate cycle (TCA cycle)
spus00260
Glycine, serine and threonine metabolism
spus00280
Valine, leucine and isoleucine degradation
spus00310
Lysine degradation
spus00380
Tryptophan metabolism
spus00620
Pyruvate metabolism
spus00630
Glyoxylate and dicarboxylate metabolism
spus00640
Propanoate metabolism
spus00670
One carbon pool by folate
spus00785
Lipoic acid metabolism
spus01100
Metabolic pathways
spus01110
Biosynthesis of secondary metabolites
spus01120
Microbial metabolism in diverse environments
spus01200
Carbon metabolism
spus01210
2-Oxocarboxylic acid metabolism
spus01240
Biosynthesis of cofactors
Module
spus_M00009
Citrate cycle (TCA cycle, Krebs cycle)
spus_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spus_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
spus_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
KEC45_01075 (lpdA)
00020 Citrate cycle (TCA cycle)
KEC45_01075 (lpdA)
00620 Pyruvate metabolism
KEC45_01075 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
KEC45_01075 (lpdA)
00640 Propanoate metabolism
KEC45_01075 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
KEC45_01075 (lpdA)
00280 Valine, leucine and isoleucine degradation
KEC45_01075 (lpdA)
00310 Lysine degradation
KEC45_01075 (lpdA)
00380 Tryptophan metabolism
KEC45_01075 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
KEC45_01075 (lpdA)
00670 One carbon pool by folate
KEC45_01075 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spus04147
]
KEC45_01075 (lpdA)
Enzymes [BR:
spus01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
KEC45_01075 (lpdA)
Exosome [BR:
spus04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
KEC45_01075 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_binding_2
FAD_oxidored
HI0933_like
GIDA
NAD_binding_8
FAD_binding_3
AlaDh_PNT_C
Thi4
3HCDH_N
DAO
Motif
Other DBs
NCBI-ProteinID:
USI77547
LinkDB
All DBs
Position
219086..220483
Genome browser
AA seq
465 aa
AA seq
DB search
MADYDYDVLVIGAGPGGYVAAIRAAQLGLKTACAEGRETLGGTCLNVGCIPSKAMLHASE
YFEAAAGGAMAAMGIKVKPELDLGTMHGQRKDAVKGLTGGIEFLFKKNKVDWLKGYAQFT
SKDTVEVAGKSVRAKNIIIATGSSVTPLPGVEVDNDKQIIVDSTGALELAKVPGHMVVIG
GGVIGLELGSVWRRLGAKVTVVEYLDQILPGMDGDVRKEANKIFKKQGMEFKLKTKVTSA
AVKGKKAVLTLEPAAGGDAETLEADVVLVSIGRRPNTDGLALDKAGLAVNQRGQIETDHD
FSTQVPGIWAIGDVIPGPMLAHKAEDEGIACAENIAGLTGIVNHDVIPSVVYTWPEIAGV
GLTEEQAKERGEVKVGKFPMLANSRAKTNHEPDGFVKVIADAKSDRVLGVWCIASVAGTM
IAQAAQAMEFGATSEDIAYTCHAHPTHSEAIKEAAMAVTGKPIHV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgactacgacgtccttgtcatcggtgccggccccggcggctatgtcgcg
gcgatccgcgcggcgcagcttggcctcaagaccgcgtgcgccgaagggcgcgagacgctg
ggcggcacctgcctcaacgtcggctgtatcccctcgaaggcgatgctccatgcgtccgaa
tatttcgaggctgcagcgggtggcgcgatggcggcgatgggcatcaaggtaaagcccgaa
ctcgacctcggcacgatgcacggccagcgcaaggatgccgtgaagggcctgaccggcggc
atcgaattcttgtttaagaagaacaaggtcgactggctgaagggctatgcgcagtttacc
tcgaaggacacggtcgaggttgcgggcaagtcggtgcgcgccaagaatatcatcatcgcc
accggctcgtcggtgacgccgcttccgggcgttgaagtcgataacgacaagcagatcatc
gtcgattcgaccggcgcgctcgaacttgcgaaggttccgggtcacatggtcgtcatcggc
ggcggcgtgatcgggctcgaactcggcagcgtgtggcgccgtctgggcgccaaggtcacc
gtcgtcgaatatctcgaccagatcctgcccggcatggacggtgacgtccgcaaggaagcg
aacaagatcttcaagaagcagggcatggaattcaagctcaagaccaaggtcacgtcggcc
gcggtcaagggcaagaaggccgtgctgacgctagaacccgccgctggcggtgacgccgaa
acgctcgaggccgatgtcgtgctggtatcgatcgggcgccgcccgaacaccgacggcctg
gcgctcgacaaggcgggcctcgcggtcaaccagcgcggccagatcgaaaccgaccatgat
ttcagcacgcaggtccccggcatctgggcgatcggtgacgtgatcccgggcccgatgctc
gcgcacaaggcggaagacgagggcatcgcctgcgccgagaatatcgccgggctgaccggc
atcgtgaaccacgacgtcatcccgtcggtcgtctatacgtggcccgaaatcgccggcgtc
ggcctgaccgaagagcaggcgaaggagcgtggcgaggtgaaggtcggtaaattcccgatg
ctcgcgaacagtcgagccaagaccaatcatgagcccgacggttttgtgaaggtgatcgcc
gacgccaagagcgaccgcgtgcttggcgtgtggtgcatcgcaagcgtcgccggcacgatg
atcgcgcaggccgcgcaggcgatggaattcggtgcgacgtcggaagatatcgcttacacc
tgccacgcgcatccgacgcacagcgaggcgatcaaggaagccgcgatggcggtgacgggc
aaaccgatccacgtctga
Sphingopyxis sp. USTB-05: KEC45_08615
Help
Entry
KEC45_08615 CDS
T10625
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus00010
Glycolysis / Gluconeogenesis
spus00020
Citrate cycle (TCA cycle)
spus00260
Glycine, serine and threonine metabolism
spus00280
Valine, leucine and isoleucine degradation
spus00310
Lysine degradation
spus00380
Tryptophan metabolism
spus00620
Pyruvate metabolism
spus00630
Glyoxylate and dicarboxylate metabolism
spus00640
Propanoate metabolism
spus00670
One carbon pool by folate
spus00785
Lipoic acid metabolism
spus01100
Metabolic pathways
spus01110
Biosynthesis of secondary metabolites
spus01120
Microbial metabolism in diverse environments
spus01200
Carbon metabolism
spus01210
2-Oxocarboxylic acid metabolism
spus01240
Biosynthesis of cofactors
Module
spus_M00009
Citrate cycle (TCA cycle, Krebs cycle)
spus_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spus_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
spus_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
KEC45_08615 (lpdA)
00020 Citrate cycle (TCA cycle)
KEC45_08615 (lpdA)
00620 Pyruvate metabolism
KEC45_08615 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
KEC45_08615 (lpdA)
00640 Propanoate metabolism
KEC45_08615 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
KEC45_08615 (lpdA)
00280 Valine, leucine and isoleucine degradation
KEC45_08615 (lpdA)
00310 Lysine degradation
KEC45_08615 (lpdA)
00380 Tryptophan metabolism
KEC45_08615 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
KEC45_08615 (lpdA)
00670 One carbon pool by folate
KEC45_08615 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spus04147
]
KEC45_08615 (lpdA)
Enzymes [BR:
spus01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
KEC45_08615 (lpdA)
Exosome [BR:
spus04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
KEC45_08615 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_binding_2
NAD_binding_8
GIDA
HI0933_like
FAD_binding_3
FAD_oxidored
DAO
Lys_Orn_oxgnase
Thi4
2-Hacid_dh_C
3HCDH_N
UDPG_MGDP_dh_N
AlaDh_PNT_C
GMC_oxred_N
Motif
Other DBs
NCBI-ProteinID:
USI78935
LinkDB
All DBs
Position
complement(1904383..1905780)
Genome browser
AA seq
465 aa
AA seq
DB search
MADTNYDLIVLGSGPGGYVAAIRAAQLGLKTAIVERENLGGICLNWGCIPTKALLRSAEI
YHYMQHAGDYGLVAAQISADIDAVVKRSRGVAKQLSQGVAFLMKKHKITVHMGEGKLTAP
GKLEVKGEKGTETLSAKNIIVATGARARDLPFAPADGKRIWTYRHALVPPEMPKKLLVIG
SGAIGIEFASFYSDMGVDVTVVEMLDRLVPVEDADVSAFLEKALKKQGMTIFTGAGVEEL
KATATGVTAKIKTKDGKTESAEFSHAIVAIGIVPNTENIGLETLGVKTTKGHIDTDAMCR
TNIPGIWAIGDVTAPPWLAHKAMHESVISVEAIAGNHPHAMDPRNIPGCTYCRPQIASVG
LTEAKAKELGYEVKSGTFPFIGNGKAIALGEAEGFTKTVFDAKTGELLGAHMIGAEVTEL
IQGYTIGKTAELVEDDFIGTVFPHPTLSETMHEGVLAAFGRPLHI
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
gtggccgataccaactacgacctcatcgtcctcggctcaggccccggcggctatgtcgcg
gcgatccgcgcggcgcagcttgggctgaaaaccgcaatcgtagagcgcgaaaatcttggc
ggcatttgcctcaactggggctgcatcccgaccaaggctttgctccgctcggccgaaatc
tatcattatatgcagcatgcgggcgactatggcctcgtcgcggcgcagatcagcgccgat
atcgatgccgtcgtgaagcgcagccgcggcgttgcgaagcagctcagccaaggcgtcgcc
ttcctgatgaagaagcacaagatcaccgtccatatgggcgaaggcaagttgaccgcgccg
ggcaagctggaggtgaagggcgagaaggggacagagaccctctccgccaagaatatcatc
gtcgcgacgggcgcccgcgcgcgcgacctgccgttcgctcccgcagacggcaagcgcatc
tggacctaccgtcacgcgctcgtcccgcccgaaatgccgaagaaactgctcgtcatcgga
tcgggtgcgatcggcatcgaatttgcgagcttctacagcgacatgggcgtcgatgtgacc
gtcgtcgaaatgctcgaccgcctcgtccccgtcgaggatgccgatgtgtcggccttcctc
gaaaaggcgctcaagaaacagggcatgacgatcttcaccggcgcgggcgtcgaggaactg
aaggccaccgcaaccggcgtcaccgcgaagatcaagacgaaggacggcaagaccgaaagc
gccgaattcagccacgcaatcgtcgcgatcggcatcgtcccgaacaccgagaatatcggc
cttgaaacgctcggcgtgaagacgaccaagggccatatcgacaccgacgcgatgtgccgc
accaacatccccggcatctgggcgatcggcgacgtcaccgcgccgccatggctcgcgcat
aaggcgatgcatgaatcggtgatttcggtcgaagcgatcgcgggcaaccacccgcacgcg
atggacccgcgcaacatccccggctgcacctattgccgcccgcagatcgccagcgtcgga
ctgaccgaagcaaaggccaaggaactcggttacgaggtcaagtccggcaccttccccttc
atcggcaacggcaaggcaattgctctgggcgaggccgaaggtttcaccaagaccgtgttc
gatgcgaagaccggtgaactgctgggagcgcacatgatcggcgccgaagtcaccgaactc
attcagggctatacgatcggcaagaccgccgaactggtcgaggatgatttcatcggcacc
gttttcccccatccgacgctcagcgaaaccatgcatgagggcgtgctggcggcgttcgga
cggccgctgcatatttga
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integrated database retrieval system
