Sphingopyxis sp. USTB-05: KEC45_15820
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Entry
KEC45_15820 CDS
T10625
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03030
DNA replication
spus03410
Base excision repair
spus03420
Nucleotide excision repair
spus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KEC45_15820 (ligA)
03410 Base excision repair
KEC45_15820 (ligA)
03420 Nucleotide excision repair
KEC45_15820 (ligA)
03430 Mismatch repair
KEC45_15820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spus03032
]
KEC45_15820 (ligA)
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_15820 (ligA)
Enzymes [BR:
spus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KEC45_15820 (ligA)
DNA replication proteins [BR:
spus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KEC45_15820 (ligA)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KEC45_15820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KEC45_15820 (ligA)
MMR (mismatch excision repair)
DNA ligase
KEC45_15820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KEC45_15820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
USI76224
LinkDB
All DBs
Position
complement(3383674..3385848)
Genome browser
AA seq
724 aa
AA seq
DB search
MTEIESMSQADAANELMRLAKQIAYHSKRYHAEDAPEISDADYDALVRRNNELEAAFPAL
IRADSPNNAVGAAVEASPLAKVTHAQRMMSLDNAFSGEDVEEFAARVRRFLNLPGGAVVA
MTAEDKIDGLSCSLRYEKGKLVQAATRGDGSVGEDVTANVRHIADIPEELKGAAPDVFEI
RGEVYMSKADFTALNDRLMDEGRALAAQREQEFDPAAVRQFANPRNAAAGSLRQKDASVT
ASRPLRFLAHGWGEVSALPADTQYEVMQQIARWGAPVSPLLVRYESVADILAHYAEIERR
RADMDYDIDGVVYKVDSLAWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGK
LTPVGRLVPVTVGGVVVSNVTLHNRDEIGRLGVRPGDRVVIQRAGDVIPQVVENLTRDED
RAAYAFPDHCPVCNSEAVAEEGEVDVRCTGGLICNAQKFERLRHFVSRGALDIEGLGEKS
IQEFLDLGWLDKGPADIFRLKAHRADLLTREGWKEKSVDNLFAAIEAKRQPDAARLLFGL
GIRHVGAVTARDLLKGLGDIARLPEKAAELHAYIEANPQADGESDGKYMTRKVEAFKSIL
EVRADGIGPAVAEALADFFHEPHNRDLWNDLLSEVSPPLYVVETRESEVSGMTVVFTGKL
ETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAGSKLKQASALGIRVIDEAQWAEIV
AAAG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaatagaatccatgtcgcaggccgacgccgccaatgagttgatgcggctggcg
aagcaaatcgcctatcacagcaagcgctatcatgccgaggatgcgcccgagatttcggac
gccgactatgacgcgctcgtccgccgcaataacgaactcgaagccgccttcccggcgctg
atccgcgccgacagcccgaacaatgcggtcggcgccgcggtcgaggcgtcgccgcttgcc
aaggtcacgcatgcgcagcgaatgatgagtctcgacaacgccttttcgggcgaggatgtc
gaggaattcgccgcgcgcgtgcgccgcttcctcaatcttcccggcggtgcggtcgtcgcg
atgaccgccgaggacaagatcgacggtctttcctgctcgctgcgctatgaaaagggcaag
ctcgttcaggccgcaacgcgcggcgacggcagcgtgggcgaggatgtcaccgccaatgtc
cgtcacatcgccgacattcccgaggagctgaaaggcgccgcgcccgacgtcttcgaaatc
cgcggcgaagtctatatgtcgaaagccgactttaccgcgctcaacgaccggctgatggac
gaaggccgcgcgctcgcggcgcagcgcgagcaggaattcgatcccgccgccgtccgccag
tttgccaatccgcgcaacgccgcagcgggatcgctgcgccagaaggatgccagcgtcacc
gcgtcgcgcccgctgcggttcctcgcgcatggctggggagaggtcagcgcgcttcccgcc
gacacccaatatgaggtgatgcagcagatcgcgcgttggggcgcgccagtatcgccgctg
ctggtgcgttacgaaagcgtcgcagatatcctcgcgcattatgccgagatcgagcgacgc
cgcgccgacatggattatgacatcgacggcgttgtctacaaggtcgacagcttggcgtgg
cagcagcgcctcggtttcgtcgctaaggcaccgcgctgggcgatcgcgcataaattcccc
gccgaacgcgcgcagacgacattggaagcgatcgacatccaggtcgggcgtaccggcaaa
ctcacccccgtcggacggctcgtccccgtaaccgtcggtggggtcgtagtgtcgaacgtt
acgctccacaaccgcgacgagatcggccgcctcggcgtgcgccccggcgaccgcgttgtc
attcaacgcgcgggcgacgtgatcccgcaggtcgtcgagaatctcacccgcgacgaggat
cgcgctgcctatgcgttccccgaccattgccccgtctgcaacagcgaggcggtcgccgaa
gagggcgaagtcgatgtgcgctgcaccggcggcctgatctgcaacgcgcagaaattcgaa
cgcctgcgtcatttcgtcagccgcggcgcgctcgatatcgagggactgggcgaaaagagc
attcaggaatttcttgacctcggctggctcgacaagggacctgccgacatcttccgcctg
aaggcgcaccgcgccgacctcctgacgcgcgaggggtggaaggaaaagtcggtcgacaat
ctgttcgccgcgatcgaggcgaagcggcagcccgacgcggcgcggctgctctttggtctg
ggcattcgccatgtcggcgcggtgaccgcgcgcgacctgctcaaaggcctcggcgacatt
gcgcggcttcccgaaaaggcagccgaactgcacgcctatatcgaggcgaacccgcaagct
gacggtgagtccgacggcaaatatatgacgcgcaaggtcgaggcgttcaaatcgatcctc
gaagtgcgcgccgacggcatcggccccgcggtggccgaggcgctcgccgatttcttccac
gaaccgcacaatcgcgacctctggaacgatctcctctccgaagtgtcgccgccgctttat
gtcgtcgagacgcgcgagagcgaagtttcgggaatgacggtggtgttcaccggcaagctc
gagacgatgagccgcgacgaggccaaggcgcaagccgaggcgcttggcgccaaggcggcg
ggcagcgtgagcgcgaagaccgatctggtcgtcgcgggaccgggggcaggctcgaagctc
aaacaggcaagcgcgctcggcatccgcgtgatcgacgaggcccaatgggctgagattgtt
gcggcggcgggttga
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