Stakelama tenebrarum: G5C33_17135
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Entry
G5C33_17135 CDS
T06464
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spzr
Stakelama tenebrarum
Pathway
spzr03030
DNA replication
spzr03410
Base excision repair
spzr03420
Nucleotide excision repair
spzr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spzr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5C33_17135 (ligA)
03410 Base excision repair
G5C33_17135 (ligA)
03420 Nucleotide excision repair
G5C33_17135 (ligA)
03430 Mismatch repair
G5C33_17135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spzr03032
]
G5C33_17135 (ligA)
03400 DNA repair and recombination proteins [BR:
spzr03400
]
G5C33_17135 (ligA)
Enzymes [BR:
spzr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G5C33_17135 (ligA)
DNA replication proteins [BR:
spzr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5C33_17135 (ligA)
DNA repair and recombination proteins [BR:
spzr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G5C33_17135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5C33_17135 (ligA)
MMR (mismatch excision repair)
DNA ligase
G5C33_17135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5C33_17135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QIG81336
UniProt:
A0A6G6Y9T6
LinkDB
All DBs
Position
3458337..3460469
Genome browser
AA seq
710 aa
AA seq
DB search
MESLPRTDEEAAAELARLAETIAHHNRRYHTQDAPEISDAEFDALVRRNGEIEAAFPHLI
RDDSPSRQVGAAPSGHLSEVAHALPMFSLNNGFSDADIADFLGRVRRFLALADDADVPLT
AEPKIDGLSCSLRYEKGVLVQALTRGDGRVGEDVTENVRTIADIPGRLPEGVIGTPDVFE
VRGEVYMAKQDFAALNRRLREEAADPEKARQFANPRNAAAGSLRQKDASVTASRPLRFLA
WGWGEVSSLPGEHQTHVIAAIEKLGFPVSDMFVGPVDLAAALEQYRRIEARRADLPFDID
GVVYKIDRLDWQERLGSVGRAPRWAIAHKFPAEKAQTTLEKIDIQVGRTGKLTPVARLEP
VTVGGVVVTNATLHNADEIERLGVRPGDRVVVQRAGDVIPQIVENLTPEAEREAWRFPTE
CPECGSAAEREPDEVDYRCSGGLICPAQRVERLRHFVSRHALDIEGLGVVHIESFFRDGL
ITTPADIFRIGREDLLERERWAETSADNMIAAIDARRDPPLDRFLFALGIRHVGEITARD
LARRWTSWTAFREMIDRGLAKRSDMTPALGETDAKFAERVGKELAAIVETAGVGPEVARA
LFDFFGEPHNDDAVADLLEQVTPADVVHETRESPVSGKTLVFTGTLETLSRDEAKAQAEA
LGARVAGSVSAKTDMVIAGPGAGSKLKKAQDLGISVIDEAEWARIVAAGQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgctgccgcgcaccgacgaagaagccgccgccgagcttgcccggctcgccgaa
accatcgcgcatcacaaccggcgctatcatacccaggatgcgcccgagatcagcgatgcc
gaattcgatgcgctcgtgcggcgcaacggcgagatcgaagccgccttcccgcacctgatc
cgcgacgattcgccgtcgcgccaggtgggcgccgcgccatcggggcatttgtccgaagtc
gcgcatgcgctgccgatgttcagcctgaacaacggcttttccgacgcggacatcgcagat
tttctgggccgcgtgcgccggttcctggcgctggccgacgatgcggacgtgccgctgacc
gccgaaccgaagatcgacgggctttcctgctcgctgcgctatgaaaagggcgtgctggtc
caggcgctgacgcggggcgacggtcgggtgggcgaggacgtgaccgaaaatgtccgtacc
atcgccgacattcccggtcgcctgcccgaaggcgtgatcggcacgcccgacgtgttcgaa
gtgcgcggcgaagtctatatggccaagcaggatttcgccgcgctcaaccggcggctgcgc
gaagaggcggccgaccccgaaaaggcgcggcagttcgccaatccgcgcaatgccgccgcc
ggttcgctacgccagaaggacgcatcggtgacggcgtcgcgcccgctgcgtttcctcgcc
tggggctggggcgaggtgagcagtctgcccggcgagcatcagactcacgtgatcgcggcg
atcgaaaagctgggctttccggtgtccgatatgttcgtcggtccggtggatcttgccgcg
gcgctggaacaatatcgccgcatcgaggcacggcgcgccgacctgcccttcgacatcgac
ggcgtcgtctacaagatcgaccggctcgactggcaggagcggctgggcagcgtcgggcgc
gcgccgcgctgggcgatcgcgcacaaattccccgccgaaaaggcgcagacgacgctcgag
aaaatcgacatccaggtgggccgcaccggcaagctgacgcccgtcgcgcggctcgagccg
gtgacggtgggcggcgtcgtcgtgaccaacgccacgctgcacaatgccgacgagatcgag
cggctgggtgtgcggccgggcgaccgggtagtggtgcagcgcgccggggacgtgattccg
cagatcgtcgagaatctcacgcccgaggcggagcgcgaggcatggcgctttccgaccgag
tgccccgaatgcggctcggcggccgaacgcgaacccgatgaagtcgattatcgctgttcg
ggcggcctgatctgtcctgcccagcgcgtcgaacggctgcgccatttcgtgtcgcgccac
gcgctcgatatcgaaggtctgggcgtcgtccatatcgagagcttctttcgcgacgggctg
atcaccacccccgccgacattttccgcatcggccgcgaggacctgctcgagcgcgagcgc
tgggcggaaaccagcgccgacaatatgattgccgcgatcgatgcgcgccgcgatccgccg
ctcgaccgattcctcttcgcgctgggcatccggcatgtcggcgaaatcaccgcgcgcgac
ctggcgcgccgctggacgagctggacggcgtttcgggagatgatcgatcgcgggctggcg
aagcgaagcgacatgacgccggcgctgggcgaaaccgacgccaagttcgccgaacgcgtc
ggcaaggaactggcggcgatcgtcgaaaccgccggcgtcggccccgaagtggcgcgtgcc
ctgttcgatttcttcggcgagccgcacaatgacgatgccgtcgccgacctgctcgaacag
gtgacgcccgccgacgtcgtccatgaaacgcgcgagtcgccggtttcgggcaagactctg
gtgttcaccggcacgctcgagacgctgagtcgcgacgaagcgaaggcccaggcggaggct
ctgggtgctcgcgttgccggatccgtatcggccaagaccgacatggtgatcgccgggccg
ggagccggatcgaagttgaaaaaggcgcaggatctggggattagcgtcatcgacgaagcc
gaatgggcaaggatcgtcgccgctggtcagtga
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