Serratia quinivorans: E4343_23480
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Entry
E4343_23480 CDS
T05941
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
squ
Serratia quinivorans
Pathway
squ03030
DNA replication
squ03410
Base excision repair
squ03420
Nucleotide excision repair
squ03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
squ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4343_23480 (ligA)
03410 Base excision repair
E4343_23480 (ligA)
03420 Nucleotide excision repair
E4343_23480 (ligA)
03430 Mismatch repair
E4343_23480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
squ03032
]
E4343_23480 (ligA)
03400 DNA repair and recombination proteins [BR:
squ03400
]
E4343_23480 (ligA)
Enzymes [BR:
squ01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4343_23480 (ligA)
DNA replication proteins [BR:
squ03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4343_23480 (ligA)
DNA repair and recombination proteins [BR:
squ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4343_23480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4343_23480 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4343_23480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4343_23480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QBX68948
LinkDB
All DBs
Position
4996261..4998282
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILFPQHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGTLEKLLA
ADIEALKEVPEVGEIVAKHTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIE
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgaacctcactgcgccatcacgaatat
caataccatgtgctggacgcgccggaagtaccggatgcggaatacgatcgcctgatgggt
gaactgcgtgccctggaaagcgcacatccggagctgatcaccgccgattctccgacccag
cgcgtgggcgccgccccgctggcggcgttcgatcaggtgcgtcatgaagtgccgatgttg
tcactggacaacgttttcgacgaagaaagcttcctggcattctacaaacgagtgcaggat
cgcctgaagagcagcgatccgctgaccttctgctgcgagctgaagctggacggtctggcg
gtcagcctgctgtacgaagatggcgaactggttcgcgcggcaacgcgcggcgacggcaca
accggtgaaaacattacctctaacgtgcgcaccatccgcgccattccactgcgactgacc
ggtgacaatatcccacgccggctggaagtgcgcggcgaagtgtttatgccgcaggccggt
ttcgagcagatgaacgaagaggcgcgtcgcaaggacggcaagatcttcgccaatccgcgt
aacgccgccgccggttcgattcgtcagctcgacccgcgtattaccgccaaacgcccactg
acctttttctgttatggcgttggcctgctggaaggcggcgaattgcctcgcagccactgg
cagcgcctgatgcagttcaaagactgggggttaccggttagcgatcgcgccaaacgttgt
accggcagcgacgaagtgctggcgttctaccgccaggtggagcaggaccgcacgcaactc
gggtttgatatcgacggcgtggtagtaaaaattgacgatatcgacctgcaggaaacgctg
ggctttgtggcgcgtgcgccgcgctgggcgacagcattcaaattcccggcgcaggagcag
attacccaggtgcgcgaggtggagttccaggttggccgcaccggtgcgattacgccggtg
gcaagactggagcccgtgctggttgccggggtgatcgtcagcaacgccacgttgcataac
gccgatgaaattgaacgtttgggcctgcgcatcggtgatacggtgattgtgcgccgtgcc
ggcgacgtgatcccgcaggtggtgggggtgatagccgaacgtcgtccagcggacgcgcgt
gaaattttgttcccgcagcattgtccggtatgcggttccgacgttgagagagtggaaggc
gaagcggtagcgcgttgcaccggcggtctgatctgcgctgcacaacgcaaagaagcgctt
aagcactttgtttcccgtcgggcgttggacgtcgacggcatgggtgacaaaatcatcgag
cagttggtggaaaaagagtacgtgaagaatccggccgatctgttccgtctgtccgccggc
attctgaccgggctggatcgcatggggcccaaatcggcgcagaatctggtcaacgcgctg
gaaaaatccaagcagaccacctttgcccgtttcctgtatgcgcttggcattcgtgaagtc
ggcgaagccacagcggccaatctggctgcacacttcggtacgctggaaaaactgttagcc
gccgatatcgaggcgttgaaagaagtgccggaggtcggtgaaatcgtggcgaagcacacg
cgtcatttccttgacgaagagctcaaccaacaggtgatccaggaactggtcagcgacgaa
atcggtattaactggccggccccggtggtgatagtagcggaagagatcgacagcccgttt
gccggaaaaaccgtggtgctgaccggctcgttgagccagctatcacgtgacgaggccaaa
gatcgtctgacggcgctgggcgccaaggtcagtggcagcgtatcgaagaaaaccgatctg
gtgattgcaggtgaagccgccggttccaaactggtgaaggcgcaggaactgggcattgag
gtcatcgacgaagcggaaatgatccgcctgctgggggcctga
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integrated database retrieval system
