Streptomyces qinzhouensis: FQU76_24490
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Entry
FQU76_24490 CDS
T06686
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sqz
Streptomyces qinzhouensis
Pathway
sqz03030
DNA replication
sqz03410
Base excision repair
sqz03420
Nucleotide excision repair
sqz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sqz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQU76_24490 (ligA)
03410 Base excision repair
FQU76_24490 (ligA)
03420 Nucleotide excision repair
FQU76_24490 (ligA)
03430 Mismatch repair
FQU76_24490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sqz03032
]
FQU76_24490 (ligA)
03400 DNA repair and recombination proteins [BR:
sqz03400
]
FQU76_24490 (ligA)
Enzymes [BR:
sqz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQU76_24490 (ligA)
DNA replication proteins [BR:
sqz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQU76_24490 (ligA)
DNA repair and recombination proteins [BR:
sqz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQU76_24490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQU76_24490 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQU76_24490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQU76_24490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QDY81270
UniProt:
A0A5B8JT16
LinkDB
All DBs
Position
5590395..5592572
Genome browser
AA seq
725 aa
AA seq
DB search
MQGDADLPARAREEHARLAEEIDEHRFRYYVKDRPVVSDGEFDALMRSLEALEERYPALR
TPESPTQKVAGEYETDLAKVEHRERMLSLDNAFDEEELAAWAERIARDVGTPDFHFLCEL
KVDGLAVNLTYEKGKLVRAATRGDGRVGEDITPNVRTIADIPERLEGDRIPDFVEIRGEV
YFPMEAFEELNARRVAAGEQPYANPRNSASGSLRQKDPRVTATLPLHMVVHGIGARDGFT
IDCLSHAYELLHEWGLPTARHNKVADSLDGVREFIAYYGKNRHSMEHEIDGVVVKLDEIP
LQGRLGSTSRAPRWAIAWKYPPEEVNTKLVNIRVGVGRTGRITPYAQVEPVKVAGSEVEF
ATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECPECGTAL
RPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIDHFGYVTAAALTRPLEPAEPPLK
DEGDLFGLGVEQLLPIVAYVLDQDSGLPKRDPKTGEEKKATVFANQQGEARKNTLALLES
IEAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAATEGVGAIIAAS
LKQWFAEEWHQEILRKWRAAGVRMEEEGADEEQGPRPLEGLTVVVTGTLENYTRDGAKEA
LQSLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDEGGFVVLLEQGPDAAREAA
VPQEA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgcagggcgacgccgacctgcccgcgcgggcgcgcgaggagcacgcgcgactcgccgag
gagatcgacgagcaccgcttccggtactacgtgaaggaccggcccgtcgtcagcgacggg
gaattcgacgcgctgatgcggtccctggaggcgctggaggagcggtatccggcgctgcgg
acccccgaatcgccgacccagaaggtcgccggggagtacgagacggatctggcgaaggtc
gaacaccgggagcggatgctctccctcgacaacgccttcgacgaggaggagctggccgcc
tgggccgagcgcatcgcccgtgacgtcggcacccccgacttccacttcctgtgcgaactg
aaggtcgacgggctcgccgtcaacctgacgtacgagaaggggaagctggtccgcgccgcg
acccgcggcgacggccgcgtcggcgaggacatcacccccaacgtccgtaccatcgccgac
atccccgagcggctggaaggcgaccggatccccgacttcgtggagatccgcggcgaggtc
tacttccccatggaagccttcgaggagctcaacgcccgccgggtggccgccggggaacag
ccgtacgccaacccccgcaactccgcctccggttcgctgcgccagaaggacccccgggtc
acggcgaccctcccgctgcacatggtggtccacggcatcggggcccgggacggcttcacc
atcgactgtctgtcccacgcctacgaactgctgcacgaatgggggttgccgaccgcccgc
cacaacaaggtggccgactccctcgacggtgtccgcgagttcatcgcgtactacggcaag
aaccgccactcgatggagcacgagatcgacggcgtcgtcgtcaaactcgacgagatcccg
ctccaggggcggctcggctccacctcccgcgccccgcgctgggccatcgcctggaagtat
ccgccggaggaggtcaacaccaagctcgtcaatatccgcgtcggagtggggcgcaccggc
cggatcacgccctatgcccaggtcgagccggtgaaggtggccgggtccgaggtcgagttc
gccaccctccacaaccaggacgtggtccgcgccaagggcgtcctcatcggcgacacggtc
gtgctgcgcaaggccggtgatgtcattccggagatcctcggcccggtcgtcgatctgcgg
gacggcacggagcgggagttcgtgatgcccgccgaatgccccgaatgcggtacggcgctg
cgccccatgaaggagggcgatgtcgatctgcgctgccccaacgcccgctcctgcccggcc
cagctgagggagcggctgttctacctcgcgggccgcaaagccctcgacatcgaccatttc
ggctatgtgacggcggcggccctcaccagacccctggaaccggccgagccgccgctcaag
gacgagggcgatctgttcggcctcggtgtcgagcagctgctgccgatcgtggcgtacgtc
ctcgaccaggacagcggtctgcccaagcgggacccgaagacgggcgaggagaagaaggcc
accgtcttcgccaatcagcagggcgaggccaggaagaacaccctggcgctgctggagagc
atcgaggcggccaagcagcggccgctcgcccggatcctcaccggactgtcgatccgccat
gtcggcccggtcgcggcggaggcgctggcccgggagttccggtcgatcgaccggatcgag
caggccaccgaggaggaactggccgccaccgagggcgtcggggcgatcatcgcggcttcg
ctgaagcagtggttcgccgaggagtggcaccaggagatcctccgcaagtggcgggcggcc
ggtgtgcggatggaggaggagggcgccgacgaggagcagggcccgcggcctctcgaaggc
ctgaccgtcgtcgtcaccggcactctggagaactacaccagagacggcgcgaaagaagcc
ctccagagccttggcgcgaaagtgaccggatccgtttcgaagaagacggcgttcgtggtg
gtcggggacaaccccggctccaagtacgacaaggcgatgcagctcaaggtccccgttctg
gacgagggcggcttcgtcgtcctgctggagcaggggcccgacgcggctcgtgaggcggcc
gtgccgcaggaggcgtga
DBGET
integrated database retrieval system
